Conserved Protein Domain Family
UTP15_C

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pfam09384: UTP15_C 
UTP15 C terminal
U3 snoRNA is ubiquitous in eukaryotes and is required for nucleolar processing of pre-18S ribosomal RNA. It is a component of the ribosomal small subunit (SSU) processome. UTP15 is needed for optimal pre-ribosomal RNA transcription by RNA polymerase I, together with a subset of U3 proteins required for transcription (t-UTPs). This entry represents the C terminal of UTP15, and is found adjacent to WD40 repeats (pfam00400).
Statistics
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PSSM-Id: 401366
View PSSM: pfam09384
Aligned: 146 rows
Threshold Bit Score: 100.253
Threshold Setting Gi: 74854575
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_007926271 392 DYKGEGADIVI-TGNdrpRHKKLVPWQRSLRQGKYAEAVDQVLPPgnweQFNRNDLITLLVTLRHRSASRAALSGRTPDR 470 Pseudocercospor...
EEA07253     386 NSKPDISHIKI-NAP----KKKITQLDRLLKAYAYGKALDLALNI------SWLHVLTVLETLSSRGALHIVFKDISKDK 454 Cryptosporidium...
XP_001610330 478 KKIIKVDETVL--EY---KSPKLSLLDRLVKTFQYQAAMDLALSL------TPQHVYNLVESLVLRGSLATAVRGKDEQT 546 Babesia bovis T2Bo
A0DIJ7       360 YSKLSDYDYKVpT-I---QNQKFSGYDKLLVSFKYKEAIVKAFKE-----KKTSIILSLVEELSERGALEVALKDIDDEE 430 Paramecium tetr...
Q9N477       348 DRDMQKVDVVAkN-A---DKLKIPKIDGMLSNFKHAAVIKLLFGGkf-rSAMDTAVVSYLRVIVMRGAIHRALAGQERSV 422 Caenorhabditis ...
EGT35450     327 DRDDQKVEVVA-KNP---EKLKIPKVDGMLSSFKHAAVIRLLFSGkf-rSTLEAAIVSYLRIIVMRGAIHRALAGQEFGV 401 Caenorhabditis ...
7_pfamImport   1 GRDDEVVEVVAkN-T---DKLKIPKIDGMLTNFKHAAVIRMLFSGkf-kSSQDASVVGYLRVILMRGAMQRALAGQDSGV 75 
EFO84359     336 DRETQKVEVVAkS-A---DRLKIPKIDGMLTNYKHAAVIRLLFGGkf-rSSVDAAIVSYLRVIVMRGAIHRALGGQEISV 410 Caenorhabditis ...
CAP24792     362 DRDSRKVEVVAkN-A---DKLKIPKIDGMLSNFKHSGVIRLLFSGkf-rSSVDAAVVSYLRVIVMRGAIHRALAGQETTV 436 Caenorhabditis ...
Q4QBH3       391 EKTRSKEQVLQ-D-----K---MKEVQFQLRSYQYGKALKTALYS-----RHPDVLVSTFEELVRRGALHVALNNQNDRT 456 Leishmania major
XP_007926271 471 LLPMLGFIHKYI-Q--HPAHVSVLYDVLLLLLD--------LYSHKF-GDW-QssddddekAVVTLV-HQIKGRVRQAAD 536 Pseudocercospor...
EEA07253     455 LLIILKMLSRSI-GrcNPSHYCIITEAIQHILNesnwqklfPLNSDI-SKSiT--------EITDAV-KRLIHKVTLEIQ 523 Cryptosporidium...
XP_001610330 547 ILPLLKFISSQLgS--DVKNTNTLLELGNAIID--------NNGWLEtCDN-S--------LVIQEL-RKIPTKINFELY 606 Babesia bovis T2Bo
A0DIJ7       431 LQMILQFILQKM-S--NPKYSGSMLHVLDILVG--------ILLSSI---------------LDIYNiGDIYDQVREELQ 484 Paramecium tetr...
Q9N477       423 QKNILVFLNHNL-Y--KAQYFSTLKEVVNAFFD--------VYALEKlDKD-----------VVKHV-QSLRGSLGRELE 479 Caenorhabditis ...
EGT35450     402 QKNLLSFLNHQL-F--KTQYFSTLREVAIAFFE--------VYGTETlHKD-----------LVKQV-QRLKLTLSRELE 458 Caenorhabditis ...
7_pfamImport  76 QKNLLIFINHHL-F--KAIYFATLKDVLVAFFD--------VYGSEKlSKD-----------VVVQV-ERLKKTLSREME 132
EFO84359     411 QKNLLIFLNHHL-F--KTQYFPTLREVALAYFD--------VYSSEKlDQN-----------VVKQV-QRLKTTLSRELE 467 Caenorhabditis ...
CAP24792     437 QKNLLIFLNHHL-F--RTEYFSILKDVTIAFFD--------VYASDKlDRD-----------VFKQV-QRLRVTLSRELE 493 Caenorhabditis ...
Q4QBH3       457 IVRVLRFATHYV-E--KPQFTDTMLVVFETIFD--------IYSAYV-GKS-A--------FFHREI-LNAQKKIGASLA 514 Leishmania major
XP_007926271 537 WASASHRTLGMIELL 551 Pseudocercospora fijiensis CIRAD86
EEA07253     524 QHNILKELDGMIELI 538 Cryptosporidium muris RN66
XP_001610330 607 QHNILHTLDGTIDLI 621 Babesia bovis T2Bo
A0DIJ7       485 IQREMTILKGMI-LI 498 Paramecium tetraurelia
Q9N477       480 VQKMISSLIGSIDLI 494 Caenorhabditis elegans
EGT35450     459 VQKMISSLIGSIDLI 473 Caenorhabditis brenneri
7_pfamImport 133 VQKMISSLIGSIDLI 147
EFO84359     468 VQKMISSLIGSIDLI 482 Caenorhabditis remanei
CAP24792     494 VQKMISSLVGSVDLI 508 Caenorhabditis briggsae
Q4QBH3       515 VIQRMERSMGIMEMI 529 Leishmania major
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