2KDO,2L9N,1P9Q,2WBM


Conserved Protein Domain Family
SBDS_domain_II

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pfam09377: SBDS_domain_II (This model is not part of the current CDD release)
SBDS protein, domain II
Members containing this domain are highly conserved in species ranging from archaea to vertebrates and plants, including several Shwachman-Bodian-Diamond syndrome (SBDS) proteins from both mouse and humans. Shwachman-Diamond syndrome is an autosomal recessive disorder with clinical features that include pancreatic exocrine insufficiency, haematological dysfunction and skeletal abnormalities. These proteins play a role in RNA metabolism. In yeast Sdo1 is involved in the biogenesis of the 60S ribosomal subunit and translational activation of ribosomes. SBDS protein is composed of three domains. The N-terminal (pfam01172) (FYSH) domain (domain I) is the most frequent target for disease mutations and contains a novel mixed alpha/beta-fold, the central domain (domain II) represented in this entry consists of a three-helical bundle and the C-terminal domain that has a ferredoxin-like fold.
Statistics
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PSSM-Id: 518868
Aligned: 175 rows
Threshold Bit Score: 50.8929
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2KDO_A        111 RDIATIVADKCVNPETKRPYTVILIERAMKDIHYSVKTNKSTKQQALEVIKQLKEKMKIERA 172 human
WP_013335964  100 KQIIDWISRNCIDTRTRTPVPPQRVEAAMQQVDVAIDPFKPVEEQVNAVIKALQKVLPLKVA 161 Vulcanisaeta distributa
WP_012185267  100 KQIIDWISRNCIDARTKAPLPPQRIELALNNVDVAIDPFKGVDEQINDVLKALQKVIPIKVA 161 Caldivirga maquilingensis
Q8ZVM7         99 RQIVEWISRNCIDVRTKTPVPPQRVENALEQARVSIDPFKSVEEQVQEVLKEIQRIIPIKVA 160 Pyrobaculum aerophilum
12_pfamImport   1 RQIIDFIARNAIDPRTNTPHPPQRIELALEQVGLSVEPFADPKVEALKAVEKLRRVLPIKIG 62 
WP_015232101  101 KQIINYIVKNTIDPKSGKPIPEQRIENALDQVRFNIDPFKGAEAQALEAVKKLSILMPIKVA 162 Caldisphaera lagunensis
WP_013267057  101 RQIITYIARNAVDPKSGSPIPEQRIENLFEELRIGVDPFRPVEQQALEAIKKMATVIPIKIA 162 Acidilobus saccharovorans
Q74M40         97 RKIIELIRKNYIDPRTGLPYTYQRIELAMEKAKINIDITKPAEAQLESIVKELKKIIPLKGE 158 Nanoarchaeum equitans
ABK78160       98 RQIIEYIAKTFVDPRSHLPHPPLRIEQAMKDGKVSVDPHKDAAEQAKGIVEKLRGIIALKSE 159
WP_012214813   98 KQIVAYIAKTYVDPKTHLPHPPLRVEQAMKDGRVSVDPQKSVDEQVKDIVDKLRSIIALKSE 159 Nitrosopumilus maritimus
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