1XWI


Conserved Protein Domain Family
Vps4_C

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pfam09336: Vps4_C 
Vps4 C terminal oligomerization domain
This domain is found at the C terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerization.
Statistics
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PSSM-Id: 401324
View PSSM: pfam09336
Aligned: 127 rows
Threshold Bit Score: 61.7454
Threshold Setting Gi: 326438053
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1XWI_A       259 LTPCSPGDPGAIEMTWMD--VP----GDKLLEP-VVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFG 319
Q240K0       425 YVACAPSDPQGESKVLMD--IQ-----GSMLKLqDVSIDHFELALQSCKPSVSEKDIERQIEFTKEFG 485 Tetrahymena thermophila SB210
EFC38827     167 IVPCSRNEKNSKKMNMLD--IK----QPEKLKIaKVTAKDIYDSIKSVKPSTNPSEILSFIEFTQNYG 228 Naegleria gruberi
EDO31428     221 apPCSEGEPGCVTCLLKD--LP-----PQKVTPrPVVLEDFIRSLSHNGSTITDEDLDKFTVFTKSYG 281 starlet sea anemone
EGD83623     362 WRPCDEEEPGALRGNVQD--IP----AEDAVAR-SVRSGDVAKAIARNPRTVSSEELARFLAYnqh-- 420 Salpingoeca rosetta
EKC22348     211 FVPCKEDEDADLKASIVE--IP-----ADKVRPrEVTLNDFLSALKTHRKTVTQEEIQKFENFTKSMG 271 Pacific oyster
XP_003652903 262 YTPCDKTDPGAIAMTWRK--VP----PNRLKEP-PLTAADLFVVMQHVKPSVAPDELDKYVAWTEQFG 322 Thermothielavioides terrest...
EAY23276     380 veaCAPNAPGARKWSLRDpdFP----ADKIESP-PVKFEDFKEAICKIHPTVSPAELVKYQTWTNEFG 442 Trichomonas vaginalis G3
XP_001704753 395 YYPCEANDPGAEKLSLTD--FTlnsdDRKLGVP-PVTRRHMDMALSTTKSSVSKADIERINMFSKEFG 459 Giardia lamblia ATCC 50803
EAY20193     366 fFPCPENTPGCVKMNLHDpnFP----IDKVPVP-PITFEDFKDAMHKAKSSVSPKDIQQFEEWTALFG 428 Trichomonas vaginalis G3
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