1Q08,6LDI,5GPE,2ZHH,2VZ4


Conserved Protein Domain Family
MerR-DNA-bind
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pfam09278: MerR-DNA-bind (This model is not part of the current CDD release)
MerR, DNA binding
Members of this family of DNA-binding domains are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold.
Links
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Statistics
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PSSM-Id: 518796
Aligned: 196 rows
Threshold Bit Score: 31.3223
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
1Q08_A         3 LQRLKFIRHARQLGFSLESIRELL-SIRIDPeHHTCQESKGIVQERLQEVEARIAELQSMQRSLQRL 68  Escherichia coli
WP_363998364  54 LRRVTFIRMSQRVGMPLSKIREVLgLLSDDR-TPTRTDWARISRCWQDDLNARIRQMEQLRDQLDDC 119 Amycolatopsis mediterranei
Q9ZHI4        48 IRRVSFIRVAQAMGMSLQDIGAALaDLPSQR-TPTADDWARISQAWKPLLQERIDALCRLRDQLDSC 113 Chromobacterium violaceum AT...
Q5LXA2        49 LRRLSFVMIAQQLGLTLPEIREVLaGLPGNR-TPTRGDWTRISTALRERLNQRIATLERLRDNLDGC 114 Ruegeria pomeroyi
Q2G9S4        49 IRRLSFVQIAQRLGLGLAEIERELaALPQGR-TPNVLDWQRISRSLRKEIDSRIQLLTRTRNKLDEC 114 Novosphingobium aromaticivor...
Q2NCA9        49 IRRLSFILIAQRLGLSLAEIEDQLaRLPQGR-NPTARDWKRISTAIRGQLDARIAELERARDRLDGC 114 Erythrobacter litoralis HTCC...
Q7CTM0        78 LRRIAIIRIAQRAGIQLSIIREAMaDLPQDR-VATTTDWRRFSQSWREMLQTRINNLVMLRDQLTGC 143 Agrobacterium fabrum str. C58
Q828Q8        53 LRRVAFVRAAQRVGIPLATIREALaELPEER-TPTHEDWARLSEAWRAELDERITQLGRLRDHLTDC 118 Streptomyces avermitilis
Q5YPY1        54 LRRVAFIRISQRVGIPLSEIKAALdRLPEGR-TPTRRDWETVSTAWRADLDDRIEQLIRLRDNLTGC 119 Nocardia farcinica
Q8P6Y4        47 LRRIAVIRVAQRLGVPLQQVLDAFsVLPDQR-TPTRAEWARMSARWRGQLDARIAELQALRDQLTDC 112 Xanthomonas campestris pv. c...
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