Conserved Protein Domain Family
Prim-Pol

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pfam09250: Prim-Pol 
Bifunctional DNA primase/polymerase, N-terminal
Members of this family adopt a structure consisting of a core of antiparallel beta sheets. They are found in various bacterial hypothetical proteins, and have been shown to harbour both primase and polymerase activities.
Statistics
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PSSM-Id: 490229
Aligned: 89 rows
Threshold Bit Score: 52.0164
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_003963347   32 ALWCAAQ-GWP-VHPL-APGRKTPAPncgdcrdrphppqecdcipagrwcHGFHAATTDPALI--------TAWWT---- 96   Streptomyces ...
WP_012361441   27 N-------NWR-FIPV--DKNKAPMTtktf-----------------qatGWTKKEALTKQEIir--------------- 64   Crocosphaera ...
WP_015163140   17 PT------HWH-LVPT---HWKRPLGy-----------------------RWEQRPFTPKQLQ--------SELAStgkv 55   Chroococcidio...
Q8ZSF5         10 ssldnlpeEWR-IVPT---FGKRPLGk-----------------------EWEKNTYSPKELQtelvrrrlKFWTNn--- 59   Nostoc sp. PC...
WP_015179917   27 A-------HWN-LTPL---HDKAAFRe-----------------------NWQTEPFINHNHF--------TTWLLdgee 64   Crinalium epi...
WP_013790549   16 ARRYIENfNLA-LVPI-PEGEKGPTG---------------------------------------------KGWNKpggy 48   Pseudomonas f...
WP_049760435   20 AQHYTDTmGFG-LVPI-PQGQKGPRG---------------------------------------------TGWNKpena 52   Deinococcus d...
Q9RWY5         12 AEALA---SWAaLVPV-PQGTKGPRA---------------------------------------------KGWDSdpaq 42   Deinococcus r...
WP_013556005    8 saLHMLGlGLV-LVRI-NHGQKRPTY---------------------------------------------SGWGKdslg 40   Deinococcus m...
WP_013817716   13 GLALVS------IPPInGKPTKAPRA---------------------------------------------KGWNMpkav 41   Methylomonas ...
WP_003963347   97 -------------RQPRF-GVGVACG---PAGLV-VIDVDAHpaplptpdrllpg--ihipesvcldglrHGFHSLA--- 153  Streptomyces ...
WP_012361441   65 -----------elCDYDVnAVGLALGk-hSVNVV-AIDHDGEs----------------------------CDKLIE--- 100  Crocosphaera ...
WP_015163140   56 rvl----drregfTQVSPtGVALICGa-nAREFIiAVDCDGIsaykqvltsnfsnennknskfanfspdeIKNAALA--- 127  Chroococcidio...
Q8ZSF5         60 -------------RLITPtGVALVCGfnhPQGYLvAIDCDGEtswrhi----------------iqinehLEPKELN--- 107  Nostoc sp. PC...
WP_015179917   65 kv-----sskgktYRAYIsGYGLRTGd-sSNGLI-AIDVDGAs----------------------------AEPVLE--- 106  Crinalium epi...
WP_013790549   49 itda-akaeahwtKHPKQ-NMGVLLG---ASGVC-SLDVDHVe---------------------------WTRQVLSdll 95   Pseudomonas f...
WP_049760435   53 lrds--vqaaarfGHSGE-NMGLLHS---VSGTA-VIDVDHQe---------------------------YAQMALAavg 98   Deinococcus d...
Q9RWY5         43 wittpsaareyltAHPGA-GVGLLHS---ESQTA-ALDIDHD----------------------------GAALALAavg 89   Deinococcus r...
WP_013556005   41 virtpedahreltLDGREwNVGVLLG---PSGLL-SLDIDRDd---------------------------LAREEFAkhg 89   Deinococcus m...
WP_013817716   42 dnpggystnlddfNNTNGfNFGLYHG---ASNTL-ALDLDDVe---------------------------LAVKVFE--- 87   Methylomonas ...
WP_003963347  154 -------------VLAALRGr-------------PDPsqdesTLRVRT-PS--GGLHLWYT----ARPGQEWRCSTGSgv 200  Streptomyces ...
WP_012361441  101 -------------ELTGLSLk------------eALPs----TVAFSS-GRtgRYQKLYSV-----SEDILNQLTNKQik 145  Crocosphaera ...
WP_015163140  128 ----------------------------------YLPh----TVAFTS-GRphRAQYLYRL-----PLHLYFPLENLKsr 163  Chroococcidio...
Q8ZSF5        108 -------------QLTPAETrdtpmeslhdraqkYLPp----TIAFTS-GRkyRSQRLYLI-----PKSKAWEVKSRKik 164  Nostoc sp. PC...
WP_015179917  107 -------------ALLGNG---------------DLPk----TVSWTS-GKpgRRQLLFQV-----PDEYRGQLVDFNrs 148  Crinalium epi...
WP_013790549   96 gmslddvaaehatSVGNPERfri---------mfAVPa-----------GCefSRHSLVWPn----PDDPDGSKHKLAmr 151  Pseudomonas f...
WP_049760435   99 idlva-lvpqnpwRIHGQKGekp---------vyLVPe-----------GMllPHHKLVWPcttgGPDITV--------- 148  Deinococcus d...
Q9RWY5         90 vdlaa-vlasnpyRVRGKKGekp---------ifRVPd-----------GLslNRHALSWPd----PSGKKGPGGRPApl 144  Deinococcus r...
WP_013556005   90 ldl--------------------------damiaVHPh-----------PTqaKGKKLWYRl----PDDLDLPGVRAFql 128  Deinococcus m...
WP_013817716   88 -------------ELTDLQ---------------LLAwleneQRVEVKsPKanRGKLLFAL-----PAGFAGAGLRQLkh 134  Methylomonas ...
WP_003963347  201 nra----------------------lawqVDVR---AHG-GYI--IAPGTRT--------ASGR----YTACGPv----- 235  Streptomyces ...
WP_012361441  146 tgekd-----------------edgkseqLEFR---VNGySII-----MGFHpktq---------sysYHWLdgcs-pqe 190  Crocosphaera ...
WP_015163140  164 riht--------------------rqrecLELR---GKN-LSS--VLPPSGHpqg-----------ycYQWLpgcs-pse 205  Chroococcidio...
Q8ZSF5        165 tg-----------------------kdehLEFR---GKN-LAS--ILPPSFHpeg-----------rnYRWLpgcs-pse 203  Nostoc sp. PC...
WP_015179917  149 vitehkg--------------vktadgeiLELR---YNK-CQS--VLPPSRHpqt-----------gaYHWInsp---sv 194  Crinalium epi...
WP_013790549  152 avkraqeigdkdseaemrakakalapvtvFELR-----G-GDVqdVLPPSIHp------gTGQP----YTWRTAps---g 212  Pseudomonas f...
WP_049760435  149 -----------------------------FELR-----S-AGVqdVLPPSIHp------qTQKP----YVWVNGvpp-sr 182  Deinococcus d...
Q9RWY5        145 ---------------------------tiFELR----GG-AGVqdVMPPSVHp------dTGRP----YEWTGPv----p 178  Deinococcus r...
WP_013556005  129 pnpdnvdp-----------itgqprpmtiFELRaspRDGsKSVqdAAPGSLHpepeyrhgDAHPhpryYIWSADgapttr 197  Deinococcus m...
WP_013817716  135 gn------------------------ktvFELR-----C-GNCqdVIIGQHP--------EGGA----YQFI-------- 164  Methylomonas ...
WP_003963347  236 RRPAPLPDW 244  Streptomyces clavuligerus
WP_012361441  191 IDITPLPEW 199  Crocosphaera subtropica
WP_015163140  206 VEIANAPDW 214  Chroococcidiopsis thermalis
Q8ZSF5        204 RQIEIAPDW 212  Nostoc sp. PCC 7120
WP_015179917  195 CEVAIAPNW 203  Crinalium epipsammum
WP_013790549  213 DSFGELPrd 221  Pseudomonas fulva
WP_049760435  183 EVLPELPAE 191  Deinococcus deserti
Q9RWY5        179 ASLGELPEL 187  Deinococcus radiodurans
WP_013556005  198 EDIPEAPQA 206  Deinococcus maricopensis
WP_013817716  165 GNPAAIPEA 173  Methylomonas methanica
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