1MU5,2Q2E


Conserved Protein Domain Family
Topo-VIb_trans

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pfam09239: Topo-VIb_trans (This model is not part of the current CDD release)
Topoisomerase VI B subunit, transducer
Members of this family adopt a structure consisting of a four-stranded beta-sheet backed by three alpha-helices, the last of which is over 50 amino acids long and extends from the body of the protein by several turns. This domain has been proposed to mediate intersubunit communication by structurally transducing signals from the ATP binding and hydrolyzis domains to the DNA binding and cleavage domains of the gyrase holoenzyme.
Statistics
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PSSM-Id: 518773
Aligned: 64 rows
Threshold Bit Score: 158.854
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1MU5_A           310 PSADSLSVIGEDLIELGLKKIFNPDFAASITRKPKAYQ-GHPFIVEAGVAFGGSIP------------VGEEP--IVLRY 374 Saccharolob...
Q9YE64           337 PKSDYLSPIGSDIIEIGLRRMFNPEWVGAVSRSPKAYR-GHPFIVEVGIAYGGGIE------------ARSEP--LLLRY 401 Aeropyrum p...
jgi:Calag_1391   324 PRSEYLSPIGEELIEVGLKRLFNPEWVKAITRQAKAYE-GHPFIVEAGIAYGGNIP------------PSEEP--VLLRY 388
WP_013266139     323 PRSDYLSPIGEELIELGLTRMFKPEWVKAVTRPARAYQ-GHPFIVEVGIAYGGAIQ------------PQEEP--ILLRF 387 Acidilobus ...
WP_011822126     315 PSADALSPFGPEIIEAGLRSILKPEFVAAVTRRPRAYE-GHPFIVEVGIAYGGEIP------------PTNEP--ILLRY 379 Hyperthermu...
WP_014026830     305 PSSEALAPIGAELIEAGLKAILKPEFVVAVTRKPRMHSgGHPFIVEVGIAYGGAIE------------PREQP--LLLRY 370 Pyrolobus f...
CBRAS:FFONT_0752 332 PSPDPLSPIGEELIKIGLKQVLNPEFVDAITRKPKSYG-GHPFIVEAGIAYGGKLSenldeiardsikGQSGPfiALLRY 410
jgi:Igag_0063    309 PRADHLSPIGAELIKIGLNSILKPEFVDAVTRKPVVYE-GHSIIVEVGIAYGGSIQ------------PSEEV--VLLRY 373
Q97ZF0           309 PSADSLSVIGEDLIELGLKKIFNPDFTASITRKPKAYQ-GHPFIVEAGIAFGGSIP------------VGEEP--IVLRY 373 Saccharolob...
Q4J979           309 PSAEALSVIGSDLIELSLQKVFNPEFVSAITRRPKAYQ-GHPFIVEAGVAYGGGIP------------AATEP--LVLRY 373 Sulfolobus ...
1MU5_A           375 ANKIPLIYDEKSDVIWKVVE--ELDWKR-YGIESDQyQMVVMVHLCSTKIPYKSAGKESIAEVEDIEKEIKNALMEVARK 451 Saccharolob...
Q9YE64           402 ANKIPLLYEEREDVSYKVVS--SINWRQ-YNVDFPA-PLVVLVHIASTKVPYKGVGKESVSDVPEIEAEIRNAVQEVARR 477 Aeropyrum p...
jgi:Calag_1391   389 ANKIPLLYEEREDVSYKVVS--SINWKI-YNIEEPM-PLVVLVHVASTKIPYKGVGKESLSEVSELESEIRNAIQEIARS 464
WP_013266139     388 ANKIPLLYEEKEDVSYKVLT--NIDWGR-YGVQEPY-QLAVLVHVASTKVPYKGVGKESISEIPELESEIRNGIHEVARS 463 Acidilobus ...
WP_011822126     380 ANKIPLLYDEKSDVAWKVVDphNFDWRN-YLVTFPA-PVAVLTHIASTKVPYKSVGKESVADVPEIEQELRNALREAARR 457 Hyperthermu...
WP_014026830     371 ANRIPLIYDEKADVAWKVLE--EFNWKH-YGVNFPA-PLVVLTHICSTKIPWKVGSKEAVAEREEIKEELHLALQEAARK 446 Pyrolobus f...
CBRAS:FFONT_0752 411 ANKIPLLYDEKADLIWSVVNpdDFNWKNtYKLD-PSdIVVVLVHIASTKVPYKGVGKESIAQVEEIRKEVEAAVQELARR 489
jgi:Igag_0063    374 ANKIPLLYDEKSDVAWKVVSe-NIDWSY-YGIVFPA-PLAILVHICGTKIPYKGVGKESIAEVPVIEKEIEEGVRQVARS 450
Q97ZF0           374 ANKIPLIYDEKSDVIWKVVe--ELDWKR-YGIESDQyQMVVMVHLCSTKIPYKSAGKESIAEVEDIEKEIKNALMEVARK 450 Saccharolob...
Q4J979           374 ANKIPLIYDEKSDVIWKVISe-EIDWKR-YGVETDQyQLVVMVHLCSTKVPYKSAGKESIADVEEIEKEIKLAIMDVARN 451 Sulfolobus ...
1MU5_A           452 LKQYLSEKRKEQEAK 466 Saccharolobus shibatae
Q9YE64           478 LRLYLSRKAREEEAI 492 Aeropyrum pernix K1
jgi:Calag_1391   465 LRLYISKRNSEHILR 479
WP_013266139     464 LRIYISRKAREELAK 478 Acidilobus saccharovorans
WP_011822126     458 LRGYLLQKRKEEEAK 472 Hyperthermus butylicus
WP_014026830     447 LRHYLIEKRREEELR 461 Pyrolobus fumarii
CBRAS:FFONT_0752 490 LRKYIVKKRKREEAE 504
jgi:Igag_0063    451 LKLYLARKQKEEEMM 465
Q97ZF0           451 LKLYLSEKRKEQEAK 465 Saccharolobus solfataricus P2
Q4J979           452 LKKYLTEKRKEQEAK 466 Sulfolobus acidocaldarius
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