Conserved Protein Domain Family
Endonuc-EcoRV

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pfam09233: Endonuc-EcoRV 
Restriction endonuclease EcoRV
Members of this family of prokaryotic restriction endonucleases recognise the double-stranded sequence 5'-GATATC-3' and cleave after T-3. They catalyze the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates.
Statistics
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PSSM-Id: 490216
Aligned: 6 rows
Threshold Bit Score: 372.178
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_014032807  23 VSDKVGDWKVKGFIDIEKSIYTISSDTKIISKILEIQLFPKFQEFADQNGYDIVLAEKQNWYPDLSFVNKSNPKIKFAVD 102 Flagellimonas r...
CCX42910      24 FIAKGDEWTIRGFIDIFKNIYTISTDTKIVSKVLELHLFPHFLTFAENIGYTIELATYQNWYPDLTFISKADPTIKFAVD 103
Q7VJK4        21 ICQPNHQWKIKGFIDSDTHIFSLSNDTKVISKILEIHIFPYILEFAKTHHFNVVLPYHQNYYPDLSFVSQKDSTIKYAID 100 Helicobacter he...
CCX44853      21 VSTKDGQWVVKGFIDVYRHIYTISTDTKVVSKIIELYIFPLLFKFAQDNGLQLELAKEQNFYPDITFKDEDGN--LFAVD 98 
WP_008588239  21 IATEKGDWIVKGFIDIYKNVYTISIDTKVVSKVMEILLIPAFEKFAQKNDLKLELPPQQNFYPDLTFTCNKTGE-RFAVD 99  Niabella soli
1_pfamImport   2 ISSEDGQWTIKGFVDMYKNIYTISSDTKIISKILEIHIFPKLLELSEKHGYKIVLADHQNYYPDISFVDNDDDSVRFAVD 81 
WP_014032807 103 IKTTYRLDDYDGFCNGFTLGSHGEYFRKRTSTKNIQFPYADYTAHICLGILYTRALStDIDETKILQLNELDKITSVIKD 182 Flagellimonas r...
CCX42910     104 LKTTYRDEECPGFCNGFTLGSHGEYFIERTSTKNIQYPYDEYCGHFCLGIIYSRADIsKDEETHIYSIDEVERIPAVIRN 183
Q7VJK4       101 LKTTYRNENNPKLCNGFTLGSHGEYFKNRESNKNIQFPYKDYLGHFCLGVIYDRV---KIDELKRYKLDDLGKIQSVIQN 177 Helicobacter he...
CCX44853      99 LKSSYRKTADR--INGMTLGAFTGYFRNRRSSKNVTYPYSSYKAHIVLGIIYSENDA-AIDERKLYTLDDLDDIVSVVKD 175
WP_008588239 100 IKSTFKDSTNK--IKSMTLGAFTGYFRNRKSTKNTLYPYGSYSAHLVLGVIYSQIEE-NPNEKTIYSIDELDKIESVIKD 176 Niabella soli
1_pfamImport  82 FKTTYRQPSKPHLCNGFTLGSHGKYFEDRTSTKNIQFPYGSYSGHYCLGIIYDRVDSrDIDETKIYSLDSLTSITSVVGK 161
WP_014032807 183 LVFFAEEKWKISSDKGGSGNTANIGSIQYIDDILKGNGVFKNLGEKIFDEYWINQGVLKVP-DpkkaGNFKK--LTKLTE 259 Flagellimonas r...
CCX42910     184 FLFFAEEKWKIASDKGGSGNTANIGSIQKIDDILNGNGVFAKAGEDIFDDYWANFGKIEIPvD----GKRKK--LSSFEE 257
Q7VJK4       178 LTLFFVEKYKIASDCSGSGNTANIGSIKNIDDILNEKGVFADLGESLFDDYWINYGKITIT-Ds--qGKTKN--ITKLSE 252 Helicobacter he...
CCX44853     176 ITFFVQEKWKIAIDRPGSGNTKNIGSVSLIEDLIYGNGPFSELGEAIFDDYWTNY----LTsDmakkAELASpyYNNLGS 251
WP_008588239 177 FHFFVQPKYKIASASPGSGNTKNIGSTNSIDKLIKGNGVFSTLGEEVYDDYWIYF----LTkDmakaLEIPRp-YTNLKS 251 Niabella soli
1_pfamImport 162 FSFFVAEKWRIASDKSGSGNTANIGSINNIADIIEGKGMFSNLGEEWFDDYWMNYKKITVP-Dg--kGGTKK--ITNLKE 236
WP_014032807 260 FLEFKG 265 Flagellimonas ruestringensis
CCX42910     258 YLRYRG 263
Q7VJK4       253 YLTYRG 258 Helicobacter hepaticus
CCX44853     252 YKKFRn 257
WP_008588239 252 YLEYKQ 257 Niabella soli
1_pfamImport 237 FVAYRK 242
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