1UF2


Conserved Protein Domain Family
RDV-p3
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pfam09231: RDV-p3 (This model is not part of the current CDD release)
Rice dwarf virus p3
Members of this family are core structural proteins found in the double-stranded RNA virus Phytoreovirus. They are large proteins without apparent domain division, with a number of all-alpha regions and one all beta domain near the C-terminal end.
Links
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Statistics
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PSSM-Id: 518768
Aligned: 3 rows
Threshold Bit Score: 1732.9
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
1UF2_A   50 QSVVSRTPIPLSKIGLQDVKKLFDINVIKCGSSLRIVDEPQVTFIVSYAKDIYDKFMCIEHDSAYEPSLTMHRVRVIYSM 129  Rice dwarf virus
Q98630   50 QSVVSRTPIPLSKIGLSDVKKLFDINVIKCGSSLRIVDEPQVTFIVSYAKDIYDKFMCIEHDSAYEPSLTMHRVRVIYSM 129  Rice dwarf virus (i...
Q86112   50 ESVVSRVPLPVSFKPISEITKLFDIIPISRGSTTSIVEHPQTSFMIKLRDNTFSDYACLDHLVAFEPALILHRLKMLFSI 129  Rice gall dwarf virus

1UF2_A  130 LNDYCAKMISEVPYESSFVGELPVKSVTLNKLGDRNMDALAEHLLFEHDVVNAQRENRIFYQRKSAPAVPVIFGDDLEPA 209  Rice dwarf virus
Q98630  130 LNDYCAKMISEVPYESSFVGELPVKSVTLNKLGDRNMDALAEHLLFEQDVVNAQRENRIFYQRKSAPAVPVTFGDDLEPA 209  Rice dwarf virus (i...
Q86112  130 LGKYASSIISEVPTLDVMIDNAQVTVIDMSKFDDRNMNTYADRLPRDIEVYAAKQDILKQYVRTSVNETPITFRDDLPMP 209  Rice gall dwarf virus

1UF2_A  210 VRERANLYHRYSVPYHQIELALHALANDLLSIQYCHPTVVYNYLSSRAPNFLRLDDQVSLKLTSAGIGTLMPRPVVQLLD 289  Rice dwarf virus
Q98630  210 VRERANLYHRYSVPYHQIELALHALANDLLSIQYCHPTVVYNYLSSRAPNFLRLDDQVSLKLTSAGIGTLMPRPVVQLLD 289  Rice dwarf virus (i...
Q86112  210 VRERPTLYRRYIVPFTPVELSLYNMALQMLDLQYCHPLIVYKYLQDRAPPFLVVNDQIGLEMLSAGDGELLPRPVMEVLD 289  Rice gall dwarf virus

1UF2_A  290 YDLVYMSPLALNNLASRLLRKISLHLVMQMVTAVQQDLGEVVSVSSNVTNPASACLVRMNVQGVQTLAVFIAQSMLNPNI 369  Rice dwarf virus
Q98630  290 YDLVYMSPLALNNLASRLLRKISLHLVMQMVTAVQQDLGEVVSVSSNVTNPASACLVRMNVQGVQTLAVFIAQSMLNPNI 369  Rice dwarf virus (i...
Q86112  290 YSLVYSSPLALNNLGSLLMSRIKTSIKVRSINEVSSSLSEIVNASSTVSNSASSAIANMNVAGVETIAAFIIRSVLNPNI 369  Rice gall dwarf virus

1UF2_A  370 SYGMISGLTLDCFSNFIYGACLMLFQALIPPSALTARQRLDINNRFAYFLIKCHATQATTARLVANQVIYPVDAIDQWQS 449  Rice dwarf virus
Q98630  370 SYGMLSGLTLDCFSNFIYGACLMLFQALIPPSALTARQRLDINNRFAYFLIKCHATQATTASVVPNQVIYPVDAIDQWQS 449  Rice dwarf virus (i...
Q86112  370 SYAMIGKLDLDAFNDFIYGTCLLLLQAITPPSAIAAMSRVRINNALAYFLLRYICPQPVYTRLLQNDVIPSLTNTLEWSS 449  Rice gall dwarf virus

1UF2_A  450 NGRDVLVAIYNNLLPGELVLTNLIQTYFRGNTAQQAAEILIPADQTSYGANETRALSAPYLFGAPINMLAPDARLSTYKR 529  Rice dwarf virus
Q98630  450 NRRDVLVAIYNNLLPGELVLSNLIQTYFRGNTAQQAAEILIPADQTSYGANETRALSAPYLFGAPINMLAPDARLSTYKR 529  Rice dwarf virus (i...
Q86112  450 VDRDILAAIYSNLFVADGRIWNLVSRYYRELPPEEVTQVSVPARETSYGINETRGISLPYLFGDAITEMRPDNRLNDYKQ 529  Rice gall dwarf virus

1UF2_A  530 DLALPDRSPILITTVEGQNSISIENLRHKTGLIRAMY-LNGFVTQPPAWIRNANSNTALLSRFLDATPNLLGIYEAILAN 608  Rice dwarf virus
Q98630  530 DLALPDRSPILITTVEGQNSISIEILRHKTGLIRAMY-LNGFVTQPPAWIRNANSNTALLSRFLDVTPNLLGIYEAILAN 608  Rice dwarf virus (i...
Q86112  530 RLNLPSRSPILIANPMRNNVVDLTNVNVKMDFIMDLYdQNNFLKSPAQWVRNSASNSALLAKFRDSVSNITGILENVLSN 609  Rice gall dwarf virus

1UF2_A  609 TYANAVNVYCDSVYRADIPIEWKLHQSVDPQDLLFGVFGIVPQYQILNEAVPDFFAGGEDILILQLIRAVYDTLSNKLGR 688  Rice dwarf virus
Q98630  609 TYANAVNVYCDSVYRADIPTEWKLHQSVDPQDLLFGVFGIVPQYQILNEAVPDFFAGGEDILILQLIRAVYDTLSNKLGR 688  Rice dwarf virus (i...
Q86112  610 AYSNAVNTYCDSVYRAGVPLNWKYRVVIDPKDMMFVIFGVCPRYVLMGDSIPDFFAGSEDILILQLVRAIWEVMSNHMGN 689  Rice gall dwarf virus

1UF2_A  689 NPADIFHLEEVFKVIEEIVSVLVQQKIDVRKYFTESMRSGSFSKPRWDNFLRRPVAQRLPNLYSVIMTQADHVYNYMTQL 768  Rice dwarf virus
Q98630  689 NPADIFHLDEVFKVIEEIVSVLVQQKVDARKYFTESMRSGSFSKPRWDNFLRRPVAQRLPNLDSVIMTQADHVYNYMTQL 768  Rice dwarf virus (i...
Q86112  690 VPTRFFRMEDVQRDLSEMVSIVLSKKIDVTKYFTDDMRSTTFSKEAWERFIARQIGEELPPLYRTILDQVETINNYMEQM 769  Rice gall dwarf virus

1UF2_A  769 THIIPITDCFYIVKNSGFVDRGSTGPVIASSSVYENVLKVVHTIADFDAANALRLQRRRVD-NTSYtdSLSDM-FNGLRS 846  Rice dwarf virus
Q98630  769 THIIPITDCFYIVKNSGFVDRGSTGPVMASSSVYENVLKVVHTIADFEAANALRLQRRSVD-NTSYtdSLSDM-FNGLRS 846  Rice dwarf virus (i...
Q86112  770 MSIMPIVDHFYVVRNSGIAARGSVNPILAATTLNLNQINTTMIIRDWSELVRLVMTQQRVDlNTSH--SLFEAeFYKLSE 847  Rice gall dwarf virus

1UF2_A  847 ISSSEFVRSvNGRSV----FTEgrIDAIKVNMRAKFDLQFITEEGGYSKPPNVKKLMFSDFLSFLDSHKSDYRPPLLTVP 922  Rice dwarf virus
Q98630  847 ISSSEFVRSvNGRSV----FTEgrIDAIKVNMRVKFDLQFITEEGGYSKPPNVKKLMFSDFLSFLDSHKSDYRPPLLTVP 922  Rice dwarf virus (i...
Q86112  848 IASNEFVRS-NERGEaephFTD--VEAIRINMYARYELKIYKEQGEFSKPTKLNKVMHEDLTSFVKSNIGKPYPPVFTIP 924  Rice gall dwarf virus

1UF2_A  923 ITIGLNNLGETNSNTLRMRSEAIDEYFSSYVGAQILVPINVVDTRVYTEFSELRNFFTGDVVIRDDPFDVWDGVKATYIP 1002 Rice dwarf virus
Q98630  923 ITIGLNNLGETNSNTLRMRSEAIDEYFSSYVGAQILVPINVVDTRVYTEFSELRNFFTGDVVITDDPFDVWDGVKATYIP 1002 Rice dwarf virus (i...
Q86112  925 IDIMLNDLGECTSTKTRMRSFKVDEYFKCFTGAQVIIPLDYVNLEHVGSIQDLQVMFNGSVSVRIKPWTIKENFDVNYVQ 1004 Rice gall dwarf virus

1UF2_A 1003 IGVHGVRLDP 1012 Rice dwarf virus
Q98630 1003 IGVHGVRLDP 1012 Rice dwarf virus (isolate Fujian)
Q86112 1005 TGNHEVLIDP 1014 Rice gall dwarf virus
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