2HJD,1UPG,2Q0O


Conserved Protein Domain Family
Prok-TraM

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pfam09228: Prok-TraM 
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Prokaryotic Transcriptional repressor TraM
Members of this family of transcriptional repressors adopt a T-shaped structure, with a core composed of two antiparallel alpha-helices. These proteins can be divided into two parts, a 'globular head' and an 'elongated tail', and they negatively regulate conjugation and the expression of tra genes by antagonising traR/AAI-dependent activation.
Statistics
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PSSM-Id: 401243
View PSSM: pfam09228
Aligned: 14 rows
Threshold Bit Score: 113.632
Threshold Setting Gi: 81318513
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2HJD_D         1 MDLKDSVVSDt----FELRPVIGLTRGLSSADIETLTANAIRLHRQLLEKADQLFQV---LPDDIKIGTAAGGEQHLEYI 73  Agrobacterium t...
WP_011970266   1 MHTGNSSETN-----DEEEPTAPCFVSLQKSDLEVLAVSAIREHRRLIAADEGVYEEwarATTDPSVPAAVLKSLQDEYV 75  Sinorhizobium m...
Q9F5D4         1 MKDVNSSETN-----DEAKPMGSCFRSMDRSELETLAISGIREHRRLIVADEAVYEEwtrASADPSVSSAVLETLQQEYA 75  Agrobacterium r...
Q93UX8         1 MSDVNSSETN-----DETKKRRSCFGSMEKSELEALAIAAIREHRRLIVADEVVYEEwtrSSSDPAVSSAVLETLQREYI 75  Agrobacterium t...
Q1QF65         1 MRIVVSSNDDepprtGPNSDFEDIFGGLTQPELERLAIDAIREYRASVALAETTRLElvaAGADAGCCPERRAEHQRIHQ 80  Nitrobacter ham...
CAK02932       1 MGYERNDTATd----IDLRPIIGLLSNEPEQVVEILTVGAIKKHRTLVDRAERMFQV---AHAGDRSDEKEPSDAHLAYL 73  Rhizobium legum...
Q44452         1 MESEDATLTKk----VELRPLVGLTRGLHPADLEKLTIDAIRAHRRLVEKADELFQA---LPESYKSGKEVGGPQHLCYI 73  Agrobacterium f...
1UPG_A         1 xELEDANVTKk----VELRPLIGLTRGLPPTDLETITIDAIRTHRRLVEKADELFQA---LPETYKTGQACGGPQHIRYI 73  Agrobacterium t...
Q84G42         1 MNKAGSSKAN-----DEGKERESRFSSLQQSELEALAVSAILEHRCLIAADEAVYEEwirATSDPSVSGAVLKSLQEEYV 75  Rhizobium legum...
2Q0O_D         4 M---GSSEVN-----DENKEKEARYSVMTKSELEALAVSAIREHRRLLWADQAVYEEwlrASDDPSISGPVLQTLQDEYV 75  Sinorhizobium f...
2HJD_D        74 EAMIEMHAQMSAVNTLVGLLGFIPKV 99  Agrobacterium tumefaciens
WP_011970266  76 ARQKKSEAQQDELSKIIDALGYVPDL 101 Sinorhizobium medicae
Q9F5D4        76 ARQKKTESQQEELSQIIDALGYIPEV 101 Agrobacterium rhizogenes
Q93UX8        76 ARQEKSAAQQEELSEIIDALGYVPDV 101 Agrobacterium tumefaciens
Q1QF65        81 HAEAEHRARQLVLNNLVDRLGYVPKV 106 Nitrobacter hamburgensis X14
CAK02932      74 EATIEMHAQMSALTTLLNILGRTPKV 99  Rhizobium leguminosarum bv. viciae 3841
Q44452        74 EASIEMHAQMSAVSTLISILGYIPNA 99  Agrobacterium fabrum str. C58
1UPG_A        74 EASIEXHAQXSALNTLYSILGFIPKV 99  Agrobacterium tumefaciens
Q84G42        76 ARQKKSEAKQEELSEIIDVLGYVPQV 101 Rhizobium leguminosarum bv. viciae
2Q0O_D        76 ARQKRSEAQQEELSDILDALGFVPDV 101 Sinorhizobium fredii NGR234
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