3EBC


Conserved Protein Domain Family
Endonuc-HincII
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pfam09226: Endonuc-HincII 
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Restriction endonuclease HincII
Members of this family of prokaryotic restriction endonucleases recognize the double-stranded sequence 5'-GTYRAC-3' and cleave after Y-3. They catalyze the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates.
Links
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Statistics
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PSSM-Id: 312659
Aligned: 4 rows
Threshold Bit Score: 478.67
Created: 23-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
3EBC_A          13 INSILIGQKVKRPKSGTLSGHAAGEPFEKLVYKFLKENLSDLTFKQYEYLNDLFMKNPAIIGHEARYKLFNSPTLLFLLS 92 
P44413          11 INSILIGQKVKRPKSGTLSGHAAGEPFEKLVYKFLKENLSDLTFKQYEYLNDLFMKKPAIIGHEARYKLFNSPTLLFLLS 90  Haemophilus i...
jgi:Fleli_1288   9 LKNKVIGSKVSKPLSGTLSGHAAGEPFDKHVYAELKKEFPQQTFRQYEYLNDLYSKNPKVITFQERLNLFNSPTVMFLLS 88 
WP_015781868     8 LAKSLKGTTVPKPLSGTLSGHAVGEPFDKHVYTEIKKQCPKNTFRQYEYLNDLYSNNPSVIGFKSREALFNSPTVLFLLS 87  Capnocytophag...

3EBC_A          93 RGKAATENWSIENLFEEKQNDTADILLVKDQFYELLDVKTRNISKSAQAPAIISAYKLAQTCAKMIDNKEFDLFDINYLE 172
P44413          91 RGKAATENWSIENLFEEKQNDTADILLVKDQFYELLDVKTRNISKSAQAPNIISAYKLAQTCAKMIDNKEFDLFDINYLE 170 Haemophilus i...
jgi:Fleli_1288  89 RGKQATSKWDLENIFEEKQNDTADILVVKNDFYEIIDIKTRNTSKKSQPPNIISAYKLAQTCAKMLDNKEYDSFSICYFG 168
WP_015781868    88 RGKNATDKWSLNNPFEEKQNDTADILVVKDEFYELVDVKTRNIAKKAQAPNIISAYKLAQLCAKMLDNEEFDNFTINYFE 167 Capnocytophag...

3EBC_A         173 VDWELNGEDLVCVSTSFAELFKSEPSELYINWAAAMQIQFHVRDLDQGFNGTREEWAKSYLKHFVTQAEQRAISMIDKFV 252
P44413         171 VDWELNGEDLVCVSTSFAELFKSEPSELYINWAAAMQIQFHVRDLDQGFNGTREEWAKSYLKHFVTQAEQRAISMIDKFV 250 Haemophilus i...
jgi:Fleli_1288 169 IDWKLEGNFLVCIDAHSVNLFKSNPQDLYINWAAAMQIQFQVDNLEQNFEGNQEEWARQYLKHFITQAKRRAENMIEKFV 248
WP_015781868   168 VDWLLENDKLICKDTHFGCLFKENPEELYINWAAAMQIQFHVSDLDQLFKGNKKQWAQRYLKHFVTQAQKRADDMIIRFV 247 Capnocytophag...

3EBC_A         253 KPFKKYI 259
P44413         251 KPFKKYI 257 Haemophilus influenzae Rd KW20
jgi:Fleli_1288 249 KPFEKYV 255
WP_015781868   248 KPFEKYI 254 Capnocytophaga ochracea
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