4J2C


Conserved Protein Domain Family
Syntaxin-6_N

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pfam09177: Syntaxin-6_N 
Syntaxin 6, N-terminal
Members of this family, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport.
Statistics
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PSSM-Id: 401209
View PSSM: pfam09177
Aligned: 145 rows
Threshold Bit Score: 37.5527
Threshold Setting Gi: 74637398
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4J2C_A        13 EVQKAVNTAQGLFQRwT-ELLQDPSTA--T---REEIDWTTNELRNNLRSIEWDLEDLDETISIVEANPRKFNLDATELS 86 
EXX75091      13 DIENNVATALTLFNSwN-RIYNTVSSR--N---NEELKRTEEELRTTLQEIITDLDDVEETIKVVESNPDKFGLTKTEIE 86  Rhizophagus irr...
XP_006678104  12 EVEQSLVQVGSLYQAwFqQLTSNTVS-------ETDLKRQGADIRDILRNIVADLDELDETIQIVQSNPARFKLDRSHID 84  Batrachochytriu...
KJE94620      12 DVQKAMRSSEALFKRwT-ELTQLQQTKplSqsmLEELRWTTGELNQSLKAIDWDIEDLEETVGIVEANPAKFQIPQKELQ 90  Capsaspora owcz...
XP_003389021  13 DVRESLNNAQDLYSRwC-MLLEDQSD-------LEKTQGVSTDLRSCIKSIEWDLQDLDETISVVEANPQKFRVSTGEIE 84  Amphimedon quee...
XP_018652314  13 EVFKNLQLVKTLYEDwRgRL-------------NPGDQELLTKIRQTIKNIEWDLMDLQETIGAVENNPIKFHLSDKDIS 79  Schistosoma man...
CDS41019      13 EIVKSLGQAKVEFDAwKhEVVSE----------SANIKTAETALKETIRNIDWDLEDLQETVQIVERNPSKFRISVEELR 82  Echinococcus mu...
XP_004998963  14 EVENSIANAERLYARwQ-RMFTSRSA---D---DAEFKHTTEQLKTNIKSIEWDLEDLAETVSIAMREPHKFNLSQSELS 86  Salpingoeca ros...
EPB89156      12 QVEDSLVNANNLFESwK-RIQQTVSSP--K---NQELLWTADELNSALEAIEQDIEDLEEALQAAQQNPQQFNLSAKDMN 85  Mucor circinell...
CCG82501      13 DVEASIEEAKLLVDSfQ-RISQTSAA---D---SAEVQQTLQDIDQVLEEIDTDITDLQESVEVVSKDPQKYKVTSREVD 85  Taphrina deform...
4J2C_A        87 IRKAFITSTRQVVRD 101
EXX75091      87 SRREFVEQTRQRLQE 101 Rhizophagus irregularis DAOM 197198w
XP_006678104  85 ERKQFVQESRKKVEE 99  Batrachochytrium dendrobatidis JAM81
KJE94620      91 ERRAFITMTIKFVRE 105 Capsaspora owczarzaki ATCC 30864
XP_003389021  85 TRKQFIRDTRQVINK 99  Amphimedon queenslandica
XP_018652314  80 ARRQFLTEAKNVVKN 94  Schistosoma mansoni
CDS41019      83 SRRHFLQEVKTVVKN 97  Echinococcus multilocularis
XP_004998963  87 NRNDFIETSKQKLKA 101 Salpingoeca rosetta
EPB89156      86 LRKKFLNTSRNNIQV 100 Mucor circinelloides f. circinelloides 1006PhL
CCG82501      86 KRRDTIANIKRETQK 100 Taphrina deformans PYCC 5710
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