8SOK


Conserved Protein Domain Family
STN1_2

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pfam09170: STN1_2 
CST, complex subunit STN1, C terminal
STN1 is a component of the CST complex, a complex that binds to single-stranded DNA and is required for protecting telomeres from DNA degradation. The CST complex binds single-stranded DNA with high affinity in a sequence-independent manner, while isolated subunits bind DNA with low affinity on their own. In addition to telomere protection, the CST complex probably has a more general role in DNA metabolism at non-telomeric sites. This entry represents the C-terminal region of Stn1 which has two winged helix-turn-helix (wHTH) motifs, wHTH1 and wHTH2. wHTH1 is structurally similar to that in RPA32 with a large insertion between helices alpha2 and alpha3, unique to Stn1, that may allow interaction with a different set of proteins that function at telomeres such as Ctc1. wHTH2 is most similar to the DNA-binding wHTH motifs of the pur operon repressor and RepE replication initiator, but it does not bind double-stranded DNA.
Statistics
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PSSM-Id: 490169
Aligned: 20 rows
Threshold Bit Score: 242.986
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
8SOK_B       202 PSLTSLLSEK---AKEFLMENRVQSFYQQELEMVesLLSLANQPVIHSASSDQVnFKKDTTSKAIHSIFKNAIQLLQEKG 278 human
XP_005470222 199 DSAVSSLSRAtkiLKDFLKQKSVSRFRPYDVQDL--LQPLISSQPQAASADQEP-VAGPSACQQLRQLLKEALQILQDEG 275
2_pfamImport   1 EPAVSALSKAaniIKEFLIQKSVVRFRPYDVLDL--LEPLVPRQPRTESADQKP-MAGPSACQQLRQLQKEALKVLQDDG 77 
XP_023190121 197 DSAETSLSKAtnvIKDFLKQRLVAKFRPYDVQDL--LQPLISSRLQA----QEA-VAGPSGCQQLNQLLKEVLQVLQDEG 269
B8JKF4       205 SHPQYLLSRAvltLKEFLLEKEVTRFRPYDVEFL--LHPLIQR----SSAEQEAdQPGTSFATQVGKLLKETLSFLQDEG 278 zebrafish
XP_003218541 199 FGSVSVLSEK---IRAFLLRNKIQSFYKQDLETVeeFVDLIRQ----GTAAEQTdSKPHSFSSLIRESFLEAIRILENKG 271
XP_005995880 208 PVLVAALADK---IRQFVLENHVQTFSVKDLETVksLVCFANRPVQSPSPAEEA-SKVVSTSKQVRGAFNEAIQLLMNAG 283
XP_010712972 198 DFLVQTLHEK---VRDFLLENKIQTFYQQELETIhsLVSLADGPKSSPSC--QVnSGSESSSKRIHSVFKEAIKKLQEKG 272
XP_005048649 198 DFSIHTLHEK---VQGFLLENKIQTFYQQELETVdsLVSLAGVHLPSPSC-QEVkSKSNSNSKRIHSVFKEAIKMLQEKG 273
EOB09139     197 DFSIYILHEK---VKDFLLENKIQTFYQQELETIdtLVSLAGEPLSSRSC--QVnSKPDSSSKRIHSVFKEAIKMLQEEG 271
8SOK_B       279 LVFQKDDGFDNL-YYVTREDKDLHRKIHRIIQQDCQKPNHMEKGCHFLHILACARLSIRPGLSEAVLQQVLELLEDQSDI 357 human
XP_005470222 276 AVYRKVKSQDEV-YLVTVQDKDLLVAVKDIIREDSRREKYVEKGCHVLHILSAVRQRYSLNVSRAALELVLKTLECNSDI 354
2_pfamImport  78 VVYCKFKTQDEV-YHVTVQDKDLIIAIKDIIREDSKKEKYAEKGCHLLHILSAVRQRYSLSVSKEALELVLQSLECSSDI 156
XP_023190121 270 TVYRKVKSQDEV-YHVTIQDKDLLIAVKDIIREDSKREKYAEKGCHILHILSAVRQRYSLNVSKAALELVLQTLECDSDI 348
B8JKF4       279 QIFRKKRTQDEV-YNVTEQDKDLHIAIKDVLREDTKREKYAEKGCHVLHILSSVRQRYSQNLSREVLEVALTFLESNSDI 357 zebrafish
XP_003218541 272 VLFQKSKNPNDM-YYVTEQDRELHRVTLKVLKEDCKRPKYAEKGCHLRHIHNCVNQNYSPYVTEIVVRCLLDWLETNSDI 350
XP_005995880 284 SIFQKKSSSED--YVVTSENKELRTLTLDTVREDCRKWRHAEKGCSFSYILKCIQHSYNPCVTKAVMQQVLYHLEDDSDI 361
XP_010712972 273 VVFQKPSTSKDLyYHVTDHDKELLKVTLDVIKEDCQKPRHAEKGCHFLHVLRCVRQSYNPNLAEVVIQRVLELLESNSDI 352
XP_005048649 274 VVFQKPSSSKDL-YYVTDHDKDLFKMTLDVIKEDCRKPRHAEKGCHFLHILSCVRQSYNPSLAEVVMHRVLELLESNSDV 352
EOB09139     272 VVFQKPSSSKDL-YHVTDYDKDLLKVTLDVVKEDCRKPRHAEKGCHFLHVLNCVRQNYNPSLAEVVMHRVLELLESNSDV 350
8SOK_B       358 VSTMEHYYTAF 368 human
XP_005470222 355 ISTSDSHYTAI 365
2_pfamImport 157 VSTCDNYYMMF 167
XP_023190121 349 VSTSDSHYIAF 359
B8JKF4       358 ISTTEAHYIVL 368 zebrafish
XP_003218541 351 VTTMEGYYTVF 361
XP_005995880 362 YSTMDGHYMAF 372
XP_010712972 353 VSTMDGYYMAF 363
XP_005048649 353 VSTMEGYFMVF 363
EOB09139     351 VSTMEGYYMAF 361
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