Conserved Protein Domain Family
Glucodextran_B

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pfam09136: Glucodextran_B 
Glucodextranase, domain B
Members of this family adopt a structure consisting of seven/eight-strand antiparallel beta-sheets, in a Greek-key topology, similar to the immunoglobulin beta-sandwich fold. They act as cell wall anchors, where they interact with the S-layer present in the cell wall of Gram-positive bacteria by hydrophobic interactions. In glucodextranase, Domain B is buried in the S-layer, and a flexible linker located between domain B and the catalytic unit confers motion to the catalytic unit, which is capable of efficient hydrolyzis of the substrates located close to the cell surface.
Statistics
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PSSM-Id: 430428
Aligned: 8 rows
Threshold Bit Score: 82.9202
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_047835233  184 PTLSVTA-PVDNLITNQAACTVTGTTNDATSSPCTVTvklnagaAEAVTVnADGTFSKALTLVAGSNTITVVSTDTAGKS 262  Robinsoniella...
3_pfamImport    1 PELTITS-PADGLKTNKETVTVEGTVADANLDWVKVN-------GKKASV-QDGAYSLRILLNEGENIITVTAQDKAKNK 71  
OCA82535     1280 PELTITS-PTDGSKTNKETVTVTGTIADANLDWVKVN-------GQTATV-SDGKFSKRILLDEGINEITVQAKDKAGNS 1350
2_pfamImport    1 PELTIDS-PEDGDKTNRETVTVEGTVSDANLDFVDVN-------GREATVaDDGTYSKRILLDNGENQIEVIAQDLAGNV 72  
1_pfamImport    1 PDLAITN-PVNGEKTNRETVTVEGTIADEHLESVTVN-------GQAASI-GDGTFSKRILLDNGKNVIEVKAVDAAGNE 71  
WP_047911705 1526 PELVVTS-PEDGETTNAEAYTVRGTVNDEYLDTVTVN-------GEAAEVtEDGSFEHRLLINSGDNVVTVIATDLAGNE 1597 Paenibacillus
KZX53511      366 PLLTIDS-PASLVTLGSSPVTVTGQV-DPDAVSLTVN-------GIEIPV-TGGSYSASVPLVEGYNAISSRMVLSDGAT 435 
CDE58250       12 PALRIVEsPRD--TVTRATAEIVG-VTDPGA-FVTVN-------GIAVKVyKTGTFATTVDLSLGANDICVEAVTSDGAT 80  
WP_047835233  263 STVTRTVTLDQ 273  Robinsoniella sp. RHS
3_pfamImport   72 INKKVTVFAKY 82  
OCA82535     1351 IKKIITIDANY 1361
2_pfamImport   73 QTETITIDVDF 83  
1_pfamImport   72 VSETVTITAQF 82  
WP_047911705 1598 TTITRTVVVNW 1608 Paenibacillus
KZX53511      436 KTASISVSLDL 446 
CDE58250       81 VTRTQQCFRAE 91  
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