8VAL


Conserved Protein Domain Family
DNApol3-delta_C
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pfam09115: DNApol3-delta_C 
DNA polymerase III, delta subunit, C terminal
Members of this family, which are predominantly found in prokaryotic DNA polymerase III, assume an alpha helical structure, with a core of five alpha helices, and an additional small helix. They are essential for the formation of the polymerase clamp loader.
Links
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Statistics
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PSSM-Id: 490135
Aligned: 42 rows
Threshold Bit Score: 59.5812
Created: 15-Feb-2025
Updated: 25-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
8VAL_E        213 WQARETLCQAL--AYSVPSGDWYSLLAALNHEQAP--ARLHWLATLLMDALKRHHGAA--QVTNVDVPGLVAELANHLSP 286 Escherichia coli
Q9CKE8        210 LEKRREFLRQF--WLFYRKRSPLELLPFFDKAILL--HQLDWLLAFLSDALKAKLQIKs-DWLCQDLAAGVLQLSQQQSA 284 Pasteurella mu...
P43748        209 IEQRKNFLRQF--WVFYRRRSPLELLPLFDKERYV--QQVDWILAFLSDCLKHKLEIDs-HRQVADLGRGIEQFSDEQTA 283 Haemophilus in...
WP_012073594  216 IAKRHEFLRAF--WLFYQRRSPLELLPMFDKSLIL--QQTEWMAAFLADALKDKLDIRd-GWQCQDLVRGVRQFSEKQSV 290 Actinobacillus...
WP_015006170  213 LKIRKLLLNNFi-ELLKGRLDPVLFAEKCISLKGL--PVLKWLMSWLSDAIKCAHGALdnQLMNPELRADLKVFIETLHL 289 Cycloclasticus...
Q8RDE3        203 KKLRSNVLSEIekIFEKKGFEVLNEYSFFEENKEQieEVLKIFLSYLRDVLVFKTTKDlkFIKNVDYIDSIEKLESKLTF 282 Caldanaerobact...
Q3JAL5        213 LFYRKEFINNLf-SLTQGKLDLFEMVRSCLKDNLG--EPLYWISTLVEDTIRLRSGVSkrFLVNHDVANSLQLLARRASF 289 Nitrosococcus ...
jgi:Nhal_3123 198 LSLRKHFIKNLf-FLAQDKADPLEIAQNHLKNDLG--EPLYWMSTLVGDILRLKSGTSgkFLVNHDIADSLQLLAERTDF 274
WP_005223706  216 LEARAQRLQGFi-ALARGERAPLAEAAAWNKLGAA--LLLEWMAGWLCDLLRLGASATppRLDNPDQREALAALASRLDP 292 Marichromatium...
WP_012487598  215 LEQREQQLQQLt-RMSLGQLSAIELAANWHTGDAP--GLMEWFLGFLHTLARWRAGVDdpQA--QRWPTELRERLQGVEL 289 Cellvibrio jap...

8VAL_E        287 SRLQAILGDVCHIREQLMSVt--gINRELLITDLLLRI 322 Escherichia coli
Q9CKE8        285 QALLHATQIIQKVRTDLTQIn--aVNQELILLDGLTQL 320 Pasteurella multocida
P43748        284 LGLLQAIKIMQKVRSDLLTIn--gVNVELMLLDGLTRL 319 Haemophilus influenzae Rd KW20
WP_012073594  291 QGLLKANEIMRQVRSDLTRIt--aANQELILLDGLTRL 326 Actinobacillus succinogenes
WP_015006170  290 KGMHTLLEQL----NYLTSLesnqVNQQLMLEEFaiqs 323 Cycloclasticus sp. P1
Q8RDE3        283 KRLNNIINRIEQFNSQLKSN----VNYQLAVENLLLDI 316 Caldanaerobacter subterraneus subsp. tengcongensis
Q3JAL5        290 EMLFALLKKASCNREIWKGQi--nINPQLLLEEILIQW 325 Nitrosococcus oceani ATCC 19707
jgi:Nhal_3123 275 KMLFALLEKIDRDLWLWKGQi--sVNPQLLLEGLLIQW 310
WP_005223706  293 VAAHRFFRRVLEARTQCEGS----VNVQLLLESLAIEW 326 Marichromatium purpuratum
WP_012487598  290 SLLHRYLEKVLHAKRLLLSGa--nPNKQLLWEELLLDW 325 Cellvibrio japonicus
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