4JHS,6V09


Conserved Protein Domain Family
Sushi_2

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pfam09014: Sushi_2 (This model is not part of the current CDD release)
Beta-2-glycoprotein-1 fifth domain
The fifth domain of beta-2-glycoprotein-1 (b2GP-1) is composed of four well-defined anti-parallel beta-strands and two short alpha-helices, as well as a long highly flexible loop. It plays an important role in the binding of b2GP-1 to negatively charged compounds and subsequent capture for binding of anti-b2GP-1 antibodies.
Statistics
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PSSM-Id: 518637
Aligned: 22 rows
Threshold Bit Score: 133.97
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4JHS_A        96 KASCKVPVKKATVVYQGERVKIQEKFKNGMLHGDKVSFFCK--NKEKKCSYTEDAQCIDGTIEVPKCFKEHSSL---AFW 170 human
7_pfamImport   1 KAPCPVGIHRGRILYREQKLWIKELKPKRILHSELISVYCM--NTERKCGYAVSTQCIDGNLKIPECFEEPSLNtynLHY 78 
9_pfamImport   1 KAPCKIGIDRGRILYKGKKMWIGDFNPNKVLHKDIVSVWCM--NNARKCGYSVSTQCIDGRLVIPECYEEPSGVnynLYA 78 
XP_005807940 261 KAPCSVNIQRARILHNGKKIWMENFEPNRVLHLDIVSVYCM--NQAMKCGYAVPTQCIDGTLNIPECFEEPSALeytLKP 338
XP_004066257 263 RAPCTVGIKRGRIFYNARKIWIEDLKPNRVLHGEIVVFYCL--NRDEKCGYPVSSTCNDGTLPIPECFEEPGKVeynLKS 340
XP_005807939 261 RAPCEVGIKRGRIFYNARKIWIEDLRPNRVLHGEHVAFYCK--DKAEKCGYPVASTCNDGNLPIPDCYEQPGKIeynLRS 338
XP_023186925 263 RARCVIPAERSRVVIGGVKRWPFDVTDAMVPHGENVTFYCK--HPKKQCSFTAAQACFDGKLQTPECYLEPTWLqykLFP 340
XP_006635542 264 RASCIIDIRRGRIFYSSKKIWIEDLPEKRVQHSEHVAFYCK--NEEKKCGYPVVTQCVDGTLNIPECFKEPGAVeykLNY 341
XP_006012854 258 RSRCKIPVKRSRFIYYDSKVWVQEVVDGVVQHLDTVSFYCRlsGADFTCSYTVQSQCFDGTLPLPDCYEEPTWLqymLFP 337
XP_014341695 258 KASCIIPIKRGRIYYNAEKIWIEKLPEKRVQHAEEVAFYCK--NKEKKCGYPVLAQCINGTIEVPSCFKEPGRVeyqIHS 335 coelacanth
4JHS_A       171 KTDASDVKPC 180 human
7_pfamImport  79 DTLPSEITQC 88 
9_pfamImport  79 GSLPSEIQQC 88 
XP_005807940 339 NSLPSEIDQC 348
XP_004066257 341 KSLPSEIRMC 350
XP_005807939 339 KNLPSEIRAC 348
XP_023186925 341 HRLVSEIETC 350
XP_006635542 342 KSLPSEIKMC 351
XP_006012854 338 KRLVSEITPC 347
XP_014341695 336 SSLPSEIKQC 345 coelacanth
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