2B1Y


Conserved Protein Domain Family
DUF1883

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pfam08980: DUF1883 
Domain of unknown function (DUF1883)
Predicted ligand-binding domain of the PPC-like beta-sandwich fold. Observed in conserved gene neighbourhoods with diverse nucleotide-activated effector and related conflict systems, potentially recognises invasive molecules and initiates system responses or directly triggers directly-associated effector domains.
Statistics
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PSSM-Id: 490042
Aligned: 8 rows
Threshold Bit Score: 138.352
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2B1Y_A         6 FRYTHYDLKELRAGTTLEISLS-SVNNVRLXTGANFQRFTELLDFKYLGGVAKKSPIRIAVPETXHWHLIIDAEGH--SG 82  Agrobacterium f...
WP_006313995   6 FRYTHYDLKELRAGTTLEISLS-SVNNVRLMTGANFQRFTELLDFKYLGGVAKKSPIRIAVPETMHWHLIIDAEGH--SG 82  Agrobacterium
1_pfamImport   1 FRFTHYDLKELRAGTILEVQLN-AINNVRLMTASNFQRFKEGLDYKFAGGVAKKAPVKIVVPEQAHWHLIVDMEGH--HG 77 
2_pfamImport   1 -EFAEYSWDFLERGSILVVILS-GPAHLRLMDPENFAAFQDGEEFDAFGGLARRAPYRIKVPHSGPWFLAIDVAGLnvRG 78 
Q88GA0         1 MKFVH-QREHLNEDDIVVIECS-QRCNIRLMNDANFRSFKNGGRHTYHGGHFEKFPAKITVPSTGFWNITIDTVTT---- 74  Pseudomonas put...
Q880N8         1 MKFVH-QREHLNEDDLVVIECS-QTCNIRLMNDANFRSFKNGGRHTYHGGAFDTFPAKIAAPSTGFWNITIDTAGR---- 74  Pseudomonas syr...
CDD06885       1 MKYSYYDLGRLDKGQIVEVRLS-AAANVRLMDSSNYSSYKNGRRHRYYGGYVTKSPYRITVPSSGRWYVTIDLGGY--AG 77 
WP_021985965   1 MNFTHYDLGNLDKGRMVEIILQgNAANVQLLDSSNFNNYRNGRQYRYIGGLAKKSPIRLQTTHSGHWHVAIDLRGM--RG 78  Coprococcus hom...
2B1Y_A        83 LAESSVKXLPAQ 94  Agrobacterium fabrum str. C58
WP_006313995  83 LAESSVKMLPAQ 94  Agrobacterium
1_pfamImport  78 LAESSVKMVAPP 89 
2_pfamImport  79 -VRHEVSVVPPQ 89 
Q88GA0        75 --R-PISVTRKP 83  Pseudomonas putida KT2440
Q880N8        75 --KVDTNAGRKP 84  Pseudomonas syringae pv. tomato
CDD06885      78 SVKHSVQVLPga 89 
WP_021985965  79 SVRSSVRVLPEA 90  Coprococcus hominis (ex Arizal et al. 2022)
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