2FSQ


Conserved Protein Domain Family
2H-phosphodiest

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pfam08975: 2H-phosphodiest (This model is not part of the current CDD release)
Domain of unknown function (DUF1868)
This group of 2H-phosphodiesterases comprises a single family typified by the protein mlr3352 from M.loti. Members are also present in various alpha-proteobacteria, Synechocystis, Streptococcus and Chilo iridescent virus. The presence of a member of this predominantly bacterial group in a large eukaryotic DNA virus represents a potential case of horizontal transfer from a bacterial source into a virus. Several proteins of bacterial origin have been noticed in the insect viruses (L.M.Iyer, E.V.Koonin and L.Aravind, unpublished observations and these appear to have been acquired from endo-symbiotic or parasitic bacteria that share the same host cells with the viruses. Presence of 2H proteins in the proteomes of large DNA viruses (e.g. T4 57B protein and the Fowl-pox virus FPV025) may point to some role for these proteins in regulating the viral tRNA metabolism. Each member of this family contains an internal duplication, each of which contains an HXTX motif that defines the family.
Statistics
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PSSM-Id: 518609
Aligned: 13 rows
Threshold Bit Score: 142.49
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2FSQ_A        30 RFSAEGEFLPEPGNTVVCHLVE---GSQTESAIVSTRQRFLD------XPEASQLAFTPVSSLHXTVFQGVIESRRALPY 100 Agrobacterium f...
Q9A7D3        44 KFDADGRVKPFAGNTIICHVPQqgpGSETFDALLDIYRQLPV------HAFAAKVTALPPSSHHMTIFGGANDQDRKPGL 117 Caulobacter vib...
EPS37077      56 KFDVDGKVQPYAGCTVTSPLSS---SSELHVSLVSLYEKLAA------SHLSNLYALLPTTSWHMTVFEGLTNPER--DY 124
XP_013961074  31 KFDDKGNVLPFPGNTIISHLPQ---DSELYKTLLPIHEILQK------SRFTKFYTLLPPPSWHMTDFEGVCDHQRKRET 101
1_pfamImport   1 KFDTNGNVLPFPGNTIVCHLPQ---DSQLFKALLSIHEKLQQ------SRFTKFYALLPPTSWHMTVFEGVCDQRRKPGV 71 
WP_013316216  50 KFNPDGSVRRFPGNTIISHIPL---GSSASNAFTAVRDTLRQ------QDFSPCLAFTPPSSYHMTVFEGVTESKRKLPF 120 Dickeya dadantii
WP_234636347  28 RFDAEGNFLPEPGNTIVCHLRP---GSESQKAIVALQERYTQ------MPEADHLAVTPASSLHMTLFQGIIEYRRTAVF 98  Allorhizobium a...
WP_010970661  28 RFSAEGEFLPEPGNTVVCHLVE---GSQTESAIVSTRQRFLD------MPEASQLAFTPVSSLHMTVFQGVIESRRALPY 98  Agrobacterium f...
Q163H6        17 Y--SRTAFLPEAGNTVICHLDT---AHPTHHAILAARSKMQA------LRGAQRFLFTPAASLHMTVFEGAIETRRTADA 85  Roseobacter den...
Q28U92        19 RYDAE-RFLPDPGNTVVCHLDL---DSPGGAAVLRARAAMKA------LPGADRLLFTPEDSLHMTVFEGVLDARRRPNA 88  Jannaschia sp. ...
WP_013669242   9 KFTPNGQAISNPGYTVISY------ANEAMKEVVASGEKIQTaftdfpQSDQDKLALLPPYSFHITILGLFKERDQGTDK 82  Aerococcus sp. ...
Q8CYD2         8 KFKENGEFNHFPGNTVVANLYT---KQDLMEVVDIIQSRYRE------LPFIDKFTLTPRNSIHMTVIELLCHENRETEF 78  Streptococcus p...
Q8PED2        43 KFLRSRRPMPFAGNTFVGHLEQqgdGYASFDRVLDIYRELPE------HGFANKLAVLPPSSYHVTLLGGVNETDRAHGP 116 Xanthomonas cam...
2FSQ_A       101 WPQTLPLDTPIDAVTDYYRDRLSTFPT--LPAFNXRVTGLRPVG 142 Agrobacterium fabrum str. C58
Q9A7D3       118 WPADLPLDLPMADCDRLLGERLKAFRLdcDLPLRMRVNLAEPAA 161 Caulobacter vibrioides
EPS37077     125 WPKYLK-DKSMDEVVAIFKSKLENFDLqcELPFRLSVVGfdplq 167
XP_013961074 102 WPQELALDAPLQKCHDLFRDKLSTFDLgiQPPLKLSVTGLVMSK 145
1_pfamImport  72 WPKDLALDAPLQSCHDLFHEKLSKFDVgiQTPLRMAVTGIIMSK 115
WP_013316216 121 WPADLPTDAPMQSCTDHLARKLVGFDLqaTLPFKLRITDFNARq 164 Dickeya dadantii
WP_234636347  99 WPKDLPLDAPIDDMTEILAQRLTHFAp--GPDFRMKIARMLPTG 140 Allorhizobium ampelinum
WP_010970661  99 WPQTLPLDTPIDAVTDYYRDRLSTFPt--LPAFNMRVTGLRPVG 140 Agrobacterium fabrum
Q163H6        86 WPKDISRDAGIDHATAHVLERLAGFVp--PPAFSVRIAGVAPTG 127 Roseobacter denitrificans OCh 114
Q28U92        89 WPSFVDVAAPVAHVTEAMRVRLDGFEg--PGAFEVAVAAVRPGG 130 Jannaschia sp. CCS1
WP_013669242  83 WPAFLPHTYSRQKIKQALVQRFEQVVk--PQNIKMKVTGLIPQA 124 Aerococcus sp. Group 1
Q8CYD2        79 WSSNLPLDTPLQEIHDYFAKQLEIFPLl-DEEIHMRITEMGKQN 121 Streptococcus pneumoniae R6
Q8PED2       117 WPSDLARDAALADINASFLSRLQQRNTtpLGACRFVVDPTAAMT 160 Xanthomonas campestris pv. campestris
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