2FSD


Conserved Protein Domain Family
Caudo_bapla_RBP

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pfam08931: Caudo_bapla_RBP (This model is not part of the current CDD release)
Lactophage receptor-binding protein C-terminal head domain
Caudo_bapla_RBP is a family of proteins expressed from ORF18 of the Lactococcus P2-like phage. This is one of three protein domains, shoulders, neck, and head, that form the phage tail base-plate. In the overall structure this head domain exists as six trimers, and is necessary for specific recognition of the receptors at the host cell surface. Siphoviridae are the P2-like Caudovirales of Lactococcus. This family now includes DUF1914. Family Baseplate, pfam16774, is the ORF15 or shoulder component of the base-plate complex.
Statistics
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PSSM-Id: 518581
Aligned: 7 rows
Threshold Bit Score: 89.1685
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2FSD_A        37 TDLNRASGVGSTGILQARIINGVIYVRGNSIPVPNVAPNFIVPVGTFP----PAFGTNLP-QFDSSGTFYShgnlslslI 111 Bacteriophage sp.
Q1RND5       164 QMSTVQTAPGLQLQLTKKNDDLVIVRFLGSVANIKKGQTMSRTWVDKPf--rPAVVQSLIgHLVGRDSIFH--------I 233 Lactococcus pha...
Q1RND3       164 RTLTLQVGNGLELQLTKKNNDLVIVRFFGSVSNIQKGWNLSGAWVDFPf--qPTAVQSLIgHFAGRGTSFH--------I 233 Lactococcus pha...
1_pfamImport   1 TYGSLEIGNGITLIWQKKA-DIVEIKWIGRLTEINAGQTFA---VKAPfqiiPDKTKELVgHFANTTNSFH--------I 68 
O80120       162 TDLNRASGVGSTGILQARIINGVIYVRGNSIPVPNVAPNFIVPVGTFP----PAFGTNLP-QFDSSGTFYShgnlslslI 236 Lactococcus vir...
Q1RNE4       155 NSFGALAGVNLLDNWYVQEMAGGLYR-LSRTINVNHG--VDQPWGSLyi-saEIGIPSLPsGF--SQSYIS--------V 220 Lactococcus pha...
Q6YI90       169 QKWTVQTTNGLILKFTKKNNDLVIVEFFGEVTLTASGKIMGGTWVDFPy--rPSVVQSLVgHLAGSGDSFH--------V 238 Lactococcus pha...
2FSD_A       112 NMSPSG---IAVGNPNNTSM--NGKT------ISF 135 Bacteriophage sp.
Q1RND5       234 DINPDGsitWWGEDIGSNPLssRGNA------SYF 262 Lactococcus phage HD15
Q1RND3       234 DINPNGsitWWGESIGNTPIatRGNA------SYF 262 Lactococcus phage HD21
1_pfamImport  69 DLETDGtfrWWGVSGANGYI--RGTS------VYF 95 
O80120       237 NMSPSG---IAVGNPNNTSM--NGKTi-----SFA 261 Lactococcus virus bIL170
Q1RNE4       221 SMSNTSnlmWCSVTSNNAFRllTGRStsgavrSVL 255 Lactococcus phage HD17
Q6YI90       239 DINPDGsitWWGPYVGYDAMtpRGNA------SYF 267 Lactococcus phage jw32
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