Conserved Protein Domain Family
AcaB

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pfam08900: AcaB 
Transcriptional regulator AcaB
This family of proteins is found in the IncC family of broad-host-range plasmids which enables the spread of antibiotic resistance genes among human enteric pathogens. Recently, AcaB member has been characterised as a transcriptional regulator that plays a crucial role in the regulation of IncC conjugation. It is a DNA binding protein which binds upstream of the acaDB promoter to increase its transcription and, in turn, acaDB activates the transcription of IncC conjugation genes. Structurally, AcaB consists of two helical hairpins in tandem which assemble into an anti-parallel four-helix bundle to form a two-stranded antiparallel beta-sheet positioned parallel to the helices. This is structurally similar to bacterial transcription factors from the ribbon-helix-helix (RHH) superfamily.
Statistics
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PSSM-Id: 489981
Aligned: 11 rows
Threshold Bit Score: 244.16
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q6D9T8        37 RSGALKSSL--TLELHTHYAIRLWDGRRKEDAgedlakkqkerprFFTIFSMPQVIAVAGVANNDSSADNPYADALLVKL 114 Pectobacterium ...
WP_014704089  20 VPGALQGEV--WLTIQTYQAQSLIRGRRAADG-------------KPAIMGLIGFADRLKSLWQAVRFDDPYADWWLLKV 84  Gammaproteobact...
1_pfamImport   1 RVGALKSAL--TIELHTHYAIRLWEGRKKEDLtgr--------rqYPDIIGMPQVIKRAGTISVDAAADNPYADSWLIKL 70 
Q7N7S2        11 RSGALHSSL--TIELHTHYAISLWNGRRDESSkk----------nKPVIISMPRFFSLAGRISQDSLIDNPYADMAMLAL 78  Photorhabdus la...
2_pfamImport   1 KPGGLTSSL--KIEIHSNYAIRLWEGRPQAQAkegv------kkvKHAIMSMPQAIKRSGIIYQDSLADNPWADEAMFRV 72 
Q7VMK9         8 QLGPLRSDI--HFTLHTQYATRLWNGRDLVKNdkg-------eivISSIMSMPSCLALLSQINRDAEQDDPYADDYLLKF 78  [Haemophilus] d...
WP_012639362   9 NLGSLRSAM--ALTLHTHHASRIWHGRTPAEG-------------RPGIIGLNGFISIMNKLKRGAEQDDPYSDWWMLRI 73  Gammaproteobact...
WP_013818602  24 QPGDLRSET--RMTIQTRQAQKLVVGRKSADH-------------IEPIIGLLDFGRRMKLIWLSAEADDPFADWFLVKI 88  Methylomonas me...
WP_025281514  33 SPGGLRSEV--VLQIQTRQAQRLVLGRAAGPD-------------KPAIIGLVRFGMIVRRIWDSAARDDPYADAALLRI 97  Ectothiorhodosp...
CBL45350      56 RPGPIVPKA--TIRLHTNIAHQLFFGRAPDPNr------------PFRDQCFASFANNLSALWTFAQADDPYADAKLILI 121
Q5P8P1       319 DLGALVDDGvdTMTLHTKEGFRMFMGRRRDPAg-----------qYNAIPGGKRVASSLKALWTLSRNNNPYADWALLRA 387 Aromatoleum aro...
Q6D9T8       115 ENALGVSSQKIQSDVDELSGILKA-IPQTLSLTDVRSVSPLNIGVYSRSPLGYRCVWLLVGYDQLAMRVFQAFHYGLISR 193 Pectobacterium ...
WP_014704089  85 EEGVADIRAQLQGLQQRMDALITE-SNSALEFSVAQSSRPQRVSLQFANPYAFRAAQLLGEYDRLMCADMTLHYLGLDMP 163 Gammaproteobact...
1_pfamImport  71 EQALVTASASLQQSIATLQETLNA-LPAQITLSSVSSVEPLNIGVYSHSPLGYRCVWLLVGFDQLAMKTFQAFHYGFISR 149
Q7N7S2        79 ETKLASAHDQMQAALAELAATLSG-VPAQIHLSEIASVAPLNIGVYSRTPLGYRCVWLLVGYDQLVMKALQAHHYALISR 157 Photorhabdus la...
2_pfamImport  73 ETLLNEAGEHIKSRVEELEVILKS-VPPAVSFSDIASSSPLNIGVYSRSPLGYRCVWVLVGYDQMALKAFQAAHYGLISR 151
Q7VMK9        79 EQKVLGYRQEMQKMTEQMVLLYNDrIPENFQIERCANIAPIQYPIFVNTQLGYQLLYLLADFDSLARTVMTASHIALLTK 158 [Haemophilus] d...
WP_012639362  74 EEKIADTKTRLQTLREQVDQALAD-VPPALSLGENLNVQPVKLPLFVNSQLGFMAVYLLADYDDLARRLILAHHTALIDR 152 Gammaproteobact...
WP_013818602  89 EQSLTESQAMIQAKTDWLNARLGE--IRGFEIQVAQSLQPLQVPIYFQNPYGYMGAYLIADYDALASSVFTARHIALIDR 166 Methylomonas me...
WP_025281514  98 LEALEQGREDVNQLQQRVQGQLDG--VDGIAIGLAQTLTPVRIPLNFANPYGYMGAYLICDFDRLARTLLTARHVGMLDR 175 Ectothiorhodosp...
CBL45350     122 EEQIKAAREQIGDLTELLNELVESlQTSGIRIDAHQSTRPIDVPIAFRAVHAAVAIQLLGAVDSAIQKALLARHFGLISG 201
Q5P8P1       388 DHRIPELRRGLDQQAQAFDAEIRKrADKGLGFAILKSRQPKVLELGFRSPYGYAIAELIVEFDYYVRVVKTLGRKAIFSD 467 Aromatoleum aro...
Q6D9T8       194 AQRDKYLDNNGYAVRRIYHLVQGYRSFN---------VTRSDILSKTPVG--IKAI---ERFG-EPDPDIMSGHVRSSFS 258 Pectobacterium ...
WP_014704089 164 TDLIEQVSGSGRWVRRVFALPQGYHCLD---------VRRSDIRQGTPAA--IKAR---ERMG-EIPQDILNGERLPSLR 228 Gammaproteobact...
1_pfamImport 150 SERDALLHNGSRVIRQIYGLVRSYRPLK---------VTRADIEEKTPAG--LEAI---KWLG-EPDPDILSGRLRSDFS 214
Q7N7S2       158 QQCDGFLKKGGHWVRQIYGAVQPYRSFA---------VTRDDILSQTPAG--REAI---TRLG-LPDEAVMRGEKRSVFS 222 Photorhabdus la...
2_pfamImport 152 NRRDELLSHCAHLIRKVYGVLRLYRTVK---------VNRADIAIQTKEA--QQAI---EKLG-MPDTDILTGKKRSSFS 216
Q7VMK9       159 ADAADWLDAGAKLLRKCFGVIENYKHAG---------ITRKDAAENNARY--QAAI---KRMKyTLPAEILSGTVRANYA 224 [Haemophilus] d...
WP_012639362 153 STLERWLNDGAHALRSLFSLAQQYRYSG---------TTRDDFAAKNAAA--RAAL---EKFG-ELPTDVLEGTRRSRFA 217 Gammaproteobact...
WP_013818602 167 AVAEQLLQVTGKAIRRTFNLAGQWKFTG---------VTREDVLAQTSNA--LRAS---GLLG-VCPEPILSKTQRAKIS 231 Methylomonas me...
WP_025281514 176 DTSERMLYQGGRKVRRAFAAAQAWKHCA---------VTRADLLADNARA--RSAI---EAMG-TLPPDVIQGETRPRIA 240 Ectothiorhodosp...
CBL45350     202 QDWQRVLANSATPMRHLFKLAL-FRASG---------ATRADFALNNDRA--KVAV---EKLG-ELPADILAGVRRPLLG 265
Q5P8P1       468 KQVHDAIRQFTRPMRAAFEEFI--RFETwlskpellpLSRTDFLPGADAAaqRRVAavtGIFG-PVPSGIYAGHQGSRHS 544 Aromatoleum aro...
Q6D9T8       259 S 259 Pectobacterium atrosepticum
WP_014704089 229 P 229 Gammaproteobacteria
1_pfamImport 215 P 215
Q7N7S2       223 P 223 Photorhabdus laumondii subsp. laumondii
2_pfamImport 217 P 217
Q7VMK9       225 P 225 [Haemophilus] ducreyi
WP_012639362 218 P 218 Gammaproteobacteria
WP_013818602 232 P 232 Methylomonas methanica
WP_025281514 241 P 241 Ectothiorhodospira haloalkaliphila
CBL45350     266 P 266
Q5P8P1       545 Q 545 Aromatoleum aromaticum EbN1
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