1GPC


Conserved Protein Domain Family
gp32

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pfam08804: gp32 
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gp32 DNA binding protein like
gp32 is a single stranded (ss) DNA binding protein in bacteriophage T4 that is essential for DNA replication, recombination and repair. The ssDNA binding cleft of gp32 comprises regions from three structural subdomains.
Statistics
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PSSM-Id: 400934
View PSSM: pfam08804
Aligned: 10 rows
Threshold Bit Score: 189.236
Threshold Setting Gi: 380681621
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1GPC_A        18 GNGQA------VIRFLPsk-----nDEQap---------faILVNHGFkk----nGKWYIEtcsSThg-----------d 62  Escherichia vir...
KLV10242      30 KDGEN------VIRLLGs-------KDG-------------GLPFKTY-------GQHFVK---KDgekmsvy-lctkqt 72  Photobacterium ...
Q9RIC8        30 KDGNN------YLRIFPnk-----dDPN-------------GVFFQTF-------GMHYVKhqnEEgkdvttayiceqht 78  Yersinia pestis
WP_038234323  31 QNGVS------YLRVFPnm-----tDPN-------------GVFYHAF-------GMHFVKt-nEGgkaktvasicksas 78  Xenorhabdus sze...
CCZ13205      41 KIPDKqnskqiRLRILPvs----gtDPNvf----------lKLKTHSLkvdkeiaNSGFKSficln-----------deh 95  Prevotella sp. ...
AET34446      42 GNGAA------MIRLIT--------DRNkvp--------fvCVYHYNSkknvggkDRWLIAnspSTi------------- 86  Campylobacter v...
Q6WIE6        37 GNGSA------VIRFLPak-----gEDDlp---------fvKIFTHGFke----nGNWFIEncpSTi------------- 79  Vibrio phage KVP40
YP_004327438  47 GTSEN------IIRFLPiplvdmkaQEEgtipedavltpcaMIMKHAFqg----aGGWYIEnspQTf------------- 103 Salmonella viru...
WP_045991517  31 NTGKN------RVRILPsweldaegKPSl-----------eGQFYHDF-------GMHFVKd--KEgklnavyvctekty 84  Halomonas sp. S...
CCG43333      30 PPGKS------RWRILPtwk--kdgDPT---------------FFHEF-------GQHFIKd--QTgelkavy-vctdkt 76  Phaeospirillum ...
1GPC_A        63 yD-S----CPVCQyiskndlynT------DNKEYSLVKRK------T-SYWANILVvkdpAAPENEGkVFKYRF-----G 119 Escherichia vir...
KLV10242      73 hDeQ----CPICEavyeglaryKg-----DKAMENTINKMr----sAkRYLWNGIV----EGQEDKG-VQLIEL-----A 129 Photobacterium ...
Q9RIC8        79 hGhA----CQLCEmvmegrarfKg-----NKAMEERINSMr----aTpRYLVNGVLsa-rEDFADAEkCQLIEL-----P 139 Yersinia pestis
WP_038234323  79 yGeP----CELCEalmeakaihKg-----NEKMEELITDIr----sSqRFLVNGVVtt-sPELDSAEkAQLVEL-----P 139 Xenorhabdus sze...
CCZ13205      96 iKeReprgCPLCQkakelfdkaKeyrsngDDNMSKVLYKQactfkcKtTYIVRVIV----RGHEDEG-VKFWRFnenskG 170 Prevotella sp. ...
AET34446      87 -GlP----CPIQEe-------yFevlnsgDEKLARSLYGR------KvKYYTNILVvkdpANPENEGkVFLFEF-----G 143 Campylobacter v...
Q6WIE6        80 -DlP----CPCCAange--lwkTei---eDNQNIARKRKR------TlSYWANIVVikddAAPENEGkVFKYRF-----G 138 Vibrio phage KVP40
YP_004327438 104 -GnD----DPVRDhdrplwsqqKet---nDEKLKTVLKKRl----pDtKYYANILVikdgNNPENNGkVFLLEF-----G 166 Salmonella viru...
WP_045991517  85 dDkH----CAVCDairegvaeaKat---gNVALEKLMGQAr----aSgRVLVNALM----RDSEEPNkPVILEL-----P 144 Halomonas sp. S...
CCG43333      77 fGkP----CELCDavasaissaT------DDDLIKALTEAk----sKtRYLLNAIQ----PDGENAGeVVILDL-----S 133 Phaeospirillum ...
1GPC_A       120 KKIWDKINamiavDV---EMGETPVDVTCPWEGANFVLKVKq-----------vSGFSN-----YDESkflnqsaiPNID 180 Escherichia vir...
KLV10242     130 STCFDQIQ-----DRlieHMDEGFGDPLSLEEGYPFVITRT-------------GTGTDt---kYTVS--------ASPK 180 Photobacterium ...
Q9RIC8       140 STVFDDIC-----KVmseDIADDIGNPLSKEEGYAFLIKRT-------------GSGRDt---kYDVS--------PKRK 190 Yersinia pestis
WP_038234323 140 QTVFDDVL-----KGieeHLSDEIGNPLSATAGYAFKIERT-------------GAGRDt---kYSVS--------PNRK 190 Xenorhabdus sze...
CCZ13205     171 EGCYDKLMsi-ynTRrepKPDGGMYNLFDLVEGKDIVLTLNrv---------fdTQGKDtnkisYQIT------------ 228 Prevotella sp. ...
AET34446     144 SKLKEKFLawinpDEtqrSLGHTEKELYNPINGYNIELTIKkd---------pqSGFFN-----YDNTsl-----aPSPS 204 Campylobacter v...
Q6WIE6       139 KKILDKITqaaqaDE---DLGVPGMDVTCVFDGANFSLKAKk-----------vSGFPN-----YDDSkf-----gPSTE 194 Vibrio phage KVP40
YP_004327438 167 NAVKKILDsaqnpKF----STDPKFDPFDMWEGANLILNLYgeekefgnwkglvANFTNv---kWDS---------PAPL 230 Salmonella viru...
WP_045991517 145 AGVFDNVV-----DQivtFADDDV-AILCPDTGHDFIISKT-------------GSGIDt---eYSLS--------VSPK 194 Halomonas sp. S...
CCG43333     134 PTTFEKIL-----DVmeeHGA----EMIDPDAGIDIIIERK-------------GKGLNt---eYSVV--------PAAK 180 Phaeospirillum ...
1GPC_A       181 -------DESFQKELFEQMVDLSEM-TSKDKFKSFEELNTKFGQVM 218 Escherichia virus T4
KLV10242     181 r------KKALAADTMDKLINIELL-TERVDEARLLTTLNKANAVI 219 Photobacterium ganghwense
Q9RIC8       191 v-----yKGDIPEKLWTTQHDLIAY-ANQADETRLLSTARTMGRLI 230 Yersinia pestis
WP_038234323 191 s------KCEIPAKLTSSVISLENFvASQGDVNKIAIAGKAIGALT 230 Xenorhabdus szentirmaii
CCZ13205     229 -------DANFSTPLSNDIMQANEW-INDSKKWTDAYGIKQYDYLK 266 Prevotella sp. CAG:1092
AET34446     205 klgglekNEDIIDIILNKTYDLSEF-TKPEYFPSYEELKEKLERFK 249 Campylobacter virus CPX
Q6WIE6       195 ly---ggDEAKLKEVWDAMHDLNAI-IAPSAFKSEAELQKRFLQVT 236 Vibrio phage KVP40
YP_004327438 231 g------TDEYIEEIWEKEHSLFEF-FNPANFKSYEDLEKRLRKVL 269 Salmonella virus ViI
WP_045991517 195 stkvtydQSAVT--------DLTKY-VAQESEQGLLKATGAVVAVT 231 Halomonas sp. S2151
CCG43333     181 -------SKPVNKTLLAQLNDLDAY-VNQEYEAGLNKAFQALSAVS 218 Phaeospirillum molischianum DSM 120
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