1GPC


Conserved Protein Domain Family
gp32

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pfam08804: gp32 (This model is not part of the current CDD release)
gp32 DNA binding protein like
gp32 is a single stranded (ss) DNA binding protein in bacteriophage T4 that is essential for DNA replication, recombination and repair. The ssDNA binding cleft of gp32 comprises regions from three structural subdomains.
Statistics
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PSSM-Id: 518516
Aligned: 9 rows
Threshold Bit Score: 181.88
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1GPC_A        18 GNGQA------VIRFLPsk-----nDEQa---------PFAILVNHGFKKN----GKWYIEtcs--------------st 59  Tequatrovirus T4
CCZ13205      41 KIPDKqnskqiRLRILPvs----gtDPN----------VFLKLKTHSLKVDkeiaNSGFKSficl-----------ndeh 95 
WP_047884405  30 KDGEN------VIRLLGs-------KDG-------------GLPFKTY-------GQHFVKkdgekmsv----ylctkqt 72  Photobacterium ...
Q9RIC8        30 KDGNN------YLRIFPnk-----dDPN-------------GVFFQTF-------GMHYVKhqneegkdvttayiceqht 78  Yersinia pestis
WP_038234323  31 QNGVS------YLRVFPnm-----tDPN-------------GVFYHAF-------GMHFVKtneggkaktv-asicksas 78  Xenorhabdus sze...
P03695        39 GNGQA------VIRFLPsk-----nDEQa---------PFAILVNHGFKKN----GKWYIEtcsst-----------hgd 83  Tequatrovirus T4
Q6WIE6        37 GNGSA------VIRFLPak-----gEDDl---------PFVKIFTHGFKEN----GNWFIEncp--------------st 78  Vibrio phage KVP40
YP_004327438  47 GTSEN------IIRFLPiplvdmkaQEEgtipedavltPCAMIMKHAFQGA----GGWYIEnsp--------------qt 102
YP_004957015  42 GNGAA------MIRLIT--------DRNk--------vPFVCVYHYNSKKNvggkDRWLIAnsp--------------st 85 
1GPC_A        60 HGDydS----CPVCQyiskndlYNT------DNKEYSLVKR-------KTSYWANILVvkdpAAPENEGkVFKYRF---- 118 Tequatrovirus T4
CCZ13205      96 IKE--ReprgCPLCQkakelfdKAKeyrsngDDNMSKVLYKqactfkcKTTYIVRVIV----RGHEDEG-VKFWRFnens 168
WP_047884405  73 hDE--Q----CPICEavyeglaRYKg-----DKAMENTINKmr----sAKRYLWNGIV----EGQEDKG-VQLIEL---- 128 Photobacterium ...
Q9RIC8        79 hGH--A----CQLCEmvmegraRFKg-----NKAMEERINSmr----aTPRYLVNGVLsa-rEDFADAEkCQLIEL---- 138 Yersinia pestis
WP_038234323  79 yGE--P----CELCEalmeakaIHKg-----NEKMEELITDir----sSQRFLVNGVVtt-sPELDSAEkAQLVEL---- 138 Xenorhabdus sze...
P03695        84 yD---S----CPVCQyiskndlynT------DNKEYSLVKRk------T-SYWANILVvkdpAAPENEGkVFKYRF---- 139 Tequatrovirus T4
Q6WIE6        79 iDL--P----CPCCAange--lwkTei---eDNQNIARKRKr------TLSYWANIVVikddAAPENEGkVFKYRF---- 137 Vibrio phage KVP40
YP_004327438 103 fGN--D----DPVRDhdrplwsQQKet---nDEKLKTVLKKrl----pDTKYYANILVikdgNNPENNGkVFLLEF---- 165
YP_004957015  86 IGL--P----CPIQE-------EYFevlnsgDEKLARSLYGr------KVKYYTNILVvkdpANPENEGkVFLFEF---- 142
1GPC_A       119 -GKKIWDKINAMIA---VDVEMGETPVDVTCPWEGANFVLKVK---------Q--VSGFSN-----YDESkflnqs--ai 176 Tequatrovirus T4
CCZ13205     169 kGEGCYDKLMSIYNt-rREPKPDGGMYNLFDLVEGKDIVLTLN---------RvfDTQGKDtnkisYQIT---------- 228
WP_047884405 129 -ASTCFDQIQd-----rLIEHMDEGFGDPLSLEEGYPFVITRT-------------GTGTDt---kYTVSasp------- 179 Photobacterium ...
Q9RIC8       139 -PSTVFDDICk-----vMSEDIADDIGNPLSKEEGYAFLIKRT-------------GSGRDt---kYDVSpkr------- 189 Yersinia pestis
WP_038234323 139 -PQTVFDDVLk-----gIEEHLSDEIGNPLSATAGYAFKIERT-------------GAGRDt---kYSVSpnr------- 189 Xenorhabdus sze...
P03695       140 -GKKIWDKINAMIAvd---vEMGETPVDVTCPWEGANFVLKVK---------Q--VSGFSN-----YDESkflnqs--ai 197 Tequatrovirus T4
Q6WIE6       138 -GKKILDKITQAAQad---eDLGVPGMDVTCVFDGANFSLKAK---------K--VSGFPN-----YDDSkfgpst---e 194 Vibrio phage KVP40
YP_004327438 166 -GNAVKKILDSAQNpk----fSTDPKFDPFDMWEGANLILNLYgeekefgnwKglVANFTNv---kWDSpap-------- 229
YP_004957015 143 -GSKLKEKFLAWINpdeTQRSLGHTEKELYNPINGYNIELTIK---------KdpQSGFFN-----YDNTslapspsklg 207
1GPC_A       177 pnidDESFQKELFEQMVDLSEM-TSKDKFKSFEELNTKFGQVM 218 Tequatrovirus T4
CCZ13205     229 ----DANFSTPLSNDIMQANEW-INDSKKWTDAYGIKQYDYLK 266
WP_047884405 180 --krKKALAADTMDKLINIELL-TERVDEARLLTTLNKANAVI 219 Photobacterium ganghwense
Q9RIC8       190 -kvyKGDIPEKLWTTQHDLIAY-ANQADETRLLSTARTMGRLI 230 Yersinia pestis
WP_038234323 190 --ksKCEIPAKLTSSVISLENFvASQGDVNKIAIAGKAIGALT 230 Xenorhabdus szentirmaii
P03695       198 pnidDESFQKELFEQMVDLSEM-TSKDKFKSFEELNTKFGQVM 239 Tequatrovirus T4
Q6WIE6       195 lyggDEAKLKEVWDAMHDLNAI-IAPSAFKSEAELQKRFLQVT 236 Vibrio phage KVP40
YP_004327438 230 --lgTDEYIEEIWEKEHSLFEF-FNPANFKSYEDLEKRLRKVL 269
YP_004957015 208 glekNEDIIDIILNKTYDLSEF-TKPEYFPSYEELKEKLERFK 249
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