1RW2


Conserved Protein Domain Family
Ku_PK_bind

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pfam08785: Ku_PK_bind (This model is not part of the current CDD release)
Ku C terminal domain like
The non-homologous end joining (NHEJ) pathway is one method by which double stranded breaks in chromosomal DNA are repaired. Ku is a component of a multi-protein complex that is involved in the NHEJ. Ku has affinity for DNA ends and recruits the DNA-dependent protein kinase catalytic subunit (DNA-PKcs). This domain is found at the C terminal of Ku which binds to DNA-PKcs.
Statistics
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PSSM-Id: 518504
Aligned: 87 rows
Threshold Bit Score: 83.7986
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1RW2_A        35 NPAENFRVLVKQKkASFEEASNQLINHIEQFL-DTNET-PYFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEi-- 110 human
XP_003026626 709 FPLDDFKANIARG-DVVSKAVEDLAFVICEIVrKPFVPlHRKDELIECMRFLRHTCVTEDEVDAWNAFMRELKEACEd-- 785
XP_001873673 507 YPLKDFEKNVSQG-DLISKAVNDLGAVITEIVmRPFAS-RRTTELLDCMQAMRKTSLEEDEIDAWNAFLTSLKKKCLs-r 583
XP_001828487 734 YPLRDFKKNISQG-DVVSKAVEDLGEVIKEVVmKPFTK-RREDEMVECMRVLRGTCREEDEIDAWNAFITDLKKKCLs-k 810
XP_007325361 742 FPLKDFGKNLEQG-DVVSKAVEDLREVIVEVVmRPFAS-KRHEEMIDCLRALRDTCLKEDEIDAWNAFLPRLKEDCLr-k 818
EMD41347     707 YPLDDFRQNIARG-DVVTKAVEDLGDIIKEVVaKPFAS-RRTEEMLQCMRVLRKVALEEDEIDAWNAFLRQLHEVCLesk 784
XP_024344863 697 SPLEDFKDNISRG-DLVTKAVEDLGAVIKEIVlRPFSA-RRTEEMLQCMQELRKVCLEEDEVDAWNAFLPDLRQASVe-k 773
EPS98095     709 YPLEDFKANLARG-DVVTKAVEDLCAVIKEVVlRPFAS-RRTEEMVQCMVELRQACLEEDEVDAWNAFLRGLREACLdgk 786
XP_007389898 731 EPLEDFYKNIASG-DLVTKAVEDLAFVIRTIVfRPFSA-KRTDELLECTRALRKVSLEEDEIDAWNDFLRDLKRRCLddt 808
EGN94086     484 YPLQDFKKNIAQG-DLVSKAVEDMGVVIKDIVmKPFSS-RRHDELLDCLKTLREISLKEDEIDAWNEFLQDLKKSCIs-y 560
1RW2_A       111 KQLNHFWEIVVQD---GITLITKEEASG----SSVTAEEAKK-FLA 148 human
XP_003026626 786 VGVDEFWRGVKEAg-rELSLISDKEAEEhggtSSVSEEEAQRvSLW 830
XP_001873673 584 PGNEAFWLGVKKSg-rGLGLISTKEARQqggiSSISEGQAEE-FFA 627
XP_001828487 811 PGNPKFWAKVQEVggkELGLIGEKEAKRfggtSQYTERQVEE-FMA 855
XP_007325361 819 NGNPEFWMQVKDLg-rDISLISNKEARKyggaASVSEKRAEE-FIA 862
EMD41347     785 PGNKEFWTHVQGEg-rTISLISKSEASKfggtSDVTDAYAAE-FIH 828
XP_024344863 774 SGDPDFWLRVRDLg-rAISLISSSEASSlggkSDISETNAVEvRSH 818
EPS98095     787 PANTEFWARVRDEg-rALSIISDKEAGElggkSDVTESESAE-FIQ 830
XP_007389898 809 PGNDYFWTRLSDLg-rDMSLIGQSEAERqggrSDVSDAEADEvRFR 853
EGN94086     561 PGNQEFWTQVQKLg-rDISLISTSEANKlggiSTVSDTAATEvSSR 605
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