5MQC


Conserved Protein Domain Family
CRPV_capsid

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pfam08762: CRPV_capsid 
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CRPV capsid protein like
This is a family of capsid proteins found in positive stranded ssRNA viruses such as cricket paralysis virus (CRPV). It forms an all beta sheet structure.
Statistics
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PSSM-Id: 370104
View PSSM: pfam08762
Aligned: 8 rows
Threshold Bit Score: 175.807
Threshold Setting Gi: 123855616
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5MQC_A   29 NpnISL-LISGEVFTNFRNLIKRVNFRKATtLN-GKRISDTFDINSLIEAPRLDi-------aQyvdtetkEAKYGFSYF 99  
Q6ITS9  106 NpnISL-LISGEVFTNFRNLIKRVNFRKAT-TLnGKRISDTFDINSLIEAPRLDiaqyvdtetK-------EAKYGFSYF 176  Black queen cell virus
O56051  590 TfnASM-LMMGEKVTSFRQLIKRFSAI----------TPPTQNRYWEFTQPFWIntnrlegvtQ-------EGSSDIDGI 651  Rhopalosiphum padi ...
Q8B107  599 T--SSA-LTVGEKVTSLRQILKRFHLIYSN-LT-TSTKNNNLYRINSFKTPKPIa-------aQ-------ATMVNIDLY 659  Aphid lethal paraly...
Q4JFT2  834 T---ML-TTMGEQFVSLRMLTRR-------------SSPVDILRGDLVTLPGISf-------gT-------DNSLRQSLV 882  Taura syndrome virus
Q56QP7  684 SpnAVMgKIAGERLVNLRPLLRCFRSLGG----------ITLDRAGQILSERVY-------------------WHYKDYV 734  Solenopsis invicta ...
Q5UBY1   79 NmeALL-KGSGEQIMNLRSLLRTFRTISEN-WNlAPNTKTALTDLTDVAD-----------------------KEGRDYM 133  Acute bee paralysis...
O36967  668 S--PEA-HCIGEKIMSIRQLIKRFGMALNS-LNlISDAPNTLIAPFSVQHPTPV---------V-------APAEPMSLF 727  Drosophila C virus
5MQC_A  100 wsapttlNIVAEMYALYRGGVRVKVVTEKG----------------------------VDFVRATVSPQQTYGSdvaptt 151 
Q6ITS9  177 wsapttlNIVAEMYALYRGGVRVKVVTEKG----------------------------VDFVRATVSPQQTYGS------ 222  Black queen cell virus
O56051  652 -------SWFASLYAFYRGSMRYKIAPLSNasplvvalkp---------nslysgvrvIDTNGTWTYPDYKGAE------ 709  Rhopalosiphum padi ...
Q8B107  660 -------SYYSYIFAYYRGSFRFKIAPFENkvyaarirlip------engateanagpVQEDNTVIDETRTAAD------ 720  Aphid lethal paraly...
Q4JFT2  883 -------NIISYMYRFTHGSISYKIIPKNKg----------------------------DLYITTTSPDSIETS------ 921  Taura syndrome virus
Q56QP7  735 -------SILSYLYRFSRGGYRYKFFADDNeqgqv-------------------mstlVKNYHK-DHATSTGPS------ 781  Solenopsis invicta ...
Q5UBY1  134 -------SYLSYLYRFYRGGRRYKFFNTTAlkqsqtc---------------yirsflTPRYYTPDNTNNDGPS------ 185  Acute bee paralysis...
O36967  728 -------EYYYFIYGFWRGGMRFKLQAVRTnsaetsvktdttwtvnlwnsvqdsfnslINVFSTTDYPIKSTGA------ 794  Drosophila C virus
5MQC_A  152 histplA------------IEQIPIKGVAEFQIPYYA-----PCLSSSFRANS----ETFYY-SsGRNNLDIATSPPSI- 208 
Q6ITS9  223 ------EvaptthistplaIEQIPIKGVAEFQIPYYA-----PCLSSSFRANS----ETFYYsS-GRNNLDISTSPPSI- 285  Black queen cell virus
O56051  710 ------V------------FMTPN-EGIHELSIPYYSs---yPVTLTTYNSTD----SDVLDaR-NGFNRVIARFHSDT- 761  Rhopalosiphum padi ...
Q8B107  721 ------V------------YMPRNLEGTFEFQVPHYSrypllPNTA---GSIPvigvQDLIQ-R-NLVSVNILTEAETT- 776  Aphid lethal paraly...
Q4JFT2  922 ------TsayqfdtnramhYINTSLNPMAQISLPYYS-----PAENLVIDSKSfpqlSDL----------SISNLERTE- 979  Taura syndrome virus
Q56QP7  782 ------H------------MTYNNLNPVHEIMIPYYSqyrkiPIS------------GEVELiK-GKIQTPVEKGIKGE- 829  Solenopsis invicta ...
Q5UBY1  186 ------H------------ITYPVLNPVHEVEVPYYCqyrklPIASTSD--------------K-GYDASLMYYSNVGT- 231  Acute bee paralysis...
O36967  795 ------LpagtsgfgnsmtYIDPEVEGFMEFEIPYYNishisPATTYVRGTESpitiNSVLR-G-HLPPQIVAVAPQGTi 866  Drosophila C virus
5MQC_A  209 ------NRYYAVG-AGDDMDFSIFIGTPPC-IHASQ 236 
Q6ITS9  286 ------NRYYAVG-AGDDMDFSIFIGTPPC-IHASQ 313  Black queen cell virus
O56051  762 ------SAYVYRA-AGDDFSFGFLLGAPIViIGLSS 790  Rhopalosiphum padi virus
Q8B107  777 ------KALFYRA-VGDDFSFCGLLGPPFV-TRCTN 804  Aphid lethal paralysis virus
Q4JFT2  980 ------NEYFVLAsAGDDHTFSQLAGCPAFtFGPAE 1009 Taura syndrome virus
Q56QP7  830 ---------LYRS-GNDDLTYGWIVGSPQLyVGAAQ 855  Solenopsis invicta virus 1A
Q5UBY1  232 ------NQIVARA-GNDDFTFGWLIGTPQT-QGITR 259  Acute bee paralysis virus
O36967  867 attdvvNAQFARA-PSDDFSFMYLVGVPPL-TNVAR 900  Drosophila C virus
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