Conserved Protein Domain Family
YccV-like

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pfam08755: YccV-like (489861 is an unknown moldel)
Hemimethylated DNA-binding protein YccV like
YccV is a hemimethylated DNA binding protein which has been shown to regulate dnaA gene expression. The structure of one of the hypothetical proteins in this family has been solved and it forms a beta sheet structure with a terminating alpha helix.
Statistics
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PSSM-Id: 489861
Aligned: 121 rows
Threshold Bit Score: 59.1573
Created: 21-Aug-2024
Updated: 4-Dec-2024
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_002142242 607 PLYYIGQLVKHRWWNYHGVIIGWDWSVQAPTQWINKVyqKysTN-------DKltPHYLMLVHQdhsisskdfvsisNNT 679
XP_020302039  95 IKYRVGDVVRHKIHGYRGVIIGWDEKAVAPQSWLDKT--H--KGrke--wsEM--PNYSVIIDT-------------RDR 153
XP_003114680  90 VEFRVGDVVFHPKLEFRGVIIGWDEQAIAPEKYIKVA--H--GDnkh--fsTQ--PNYAVLIDT-------------RDR 148
XP_045100762  90 VEFRVGDVVYHKKLGFRGLIIGWDELAIAPEKFLKVA--H--GDnkashfaTQ--PNYAILIDT-------------RDR 150
Q7YTU9        90 VEFRVGDVITHTKLNFRGVIIGWDEHAIAPEKFLKVA--H--GEnkn--yaTQ--PNYAVLIDT-------------RDR 148 Caenorhabditis ...
4_pfamImport   1 VEFRVGDVIYHENLNFRGVIIGWDEKTVAPAEFIKVA--H--GEnkh--yaDQ--PNYAVLMDT-------------RDR 59 
XP_002112683 100 VRYRIGQVIRHRQWGYRGVIVGWDPVAKAPKEWLDHM--H--PAdkp-hwrKK--ANYLVLVDT-------------RDR 159
XP_001625968  94 VKYRVGQVIRHKLWNYRAVIVGWDPKLKAPDFWRDAN--H--PAdkk-hwkDM--PNYALLVDT-------------RDR 153
9_pfamImport   1 VKFRVGQVIRHKLHGYRGVIVGWDKTCKAPETWIRQN------Hhks-awrLQ--PNYAVLVDE-------------RDR 58 
XP_002125379 136 VKYRVGQVIKHKLYGYRGVIVGWDDHCKAPDLWIRRM--H---Gdrp-twqTQ--PNYAILVDE-------------RDR 194
XP_002142242 680 PRFLfaYIPQIGLDLLEIKEdlikntseiINNPYFSLFFSKWDINQ 725
XP_020302039 154 LIPQlaYVVEENIELGEGR----------IFHPLIKNYFEAFDGKH 189
XP_003114680 149 FTPQmsYIVQENLRLEKGT----------IWHPLVDKFFEGFDEQR 184
XP_045100762 151 FTPQmsYVVQENIQLDKGT----------IWHPLVEKFFDGFDEKR 186
Q7YTU9       149 LTPQlsYIVQENLEIDKGT----------VMHPLVDKFFDGFDEKR 184 Caenorhabditis elegans
4_pfamImport  60 LTPQltYVPQENIQRDKGT----------VMHPLISKFFDSFDENR 95 
XP_002112683 160 LTPQstYVAEENIEILTNRK---------IIHPKVGDHFEEFDNSR 196
XP_001625968 154 PSPQitYVPEENIEVITGTK---------IFHDEVEEFFEYHDGAV 190
9_pfamImport  59 QPTQttYVVQENIEIVKNVK---------IKHKSVDDFFDHYDGAQ 95 
XP_002125379 195 KDSQttYVVEENIEVVRNTR---------IKHKQIYDYFDEYDGAQ 231
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