1P4D


Conserved Protein Domain Family
TrwC

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pfam08751: TrwC (This model is not part of the current CDD release)
TrwC relaxase
Relaxases are DNA strand transferases which function during the conjugative cell to cell DNA transfer. TrwC binds to the origin of transfer (oriT) and melts the double helix.
Statistics
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PSSM-Id: 518478
Aligned: 90 rows
Threshold Bit Score: 160.488
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1P4D_A          10 AGSAGNYYTDk----------dNYYVLgsm--gerWAGR--GAEQ------------LGLQ-G-SVDKDVFTRLL-EGRL 60   Escherichia ...
WP_014375602     8 paAARHYVEAdrg------radDYYLT---------EGT--GIARrytatdgrvtelAP------LTGDTYETWV-AGRN 63   Blastococcus...
WP_014743124     8 paaARAYVEAdrg------radDYYLT---------EGS--GFARrftvtdgrvaelVP------LTGDAYETWV-AGRD 63   Modestobacte...
WP_007079152     8 AAAARSYVEAdhs------radDYYLG---------EGA--GVAArfvvdvrdsvspT-VHqApDLDGESYERWV-GGYD 68   Aeromicrobiu...
jgi:Noca_1102   12 AKAARAYVERdcs------radDYYLG---------EGT--GVAErlt------atpAGVAgAgSMDGDEYEQWV-AGID 67  
EON25705         8 ANAARAYVERdrs------radDYYLD---------EGT--GVAErlt------atpDGVEhAgSMDGETYEQWV-AGVD 63  
Q5HXP7          35 RNGEKSQFESgdr-------lnSYYTGrda--rgsWAPD--MSERia--------sqLGIDvTtRPTDEALARLF-EGKR 94   Gluconobacte...
Q2J7P7          22 ARAVVAYVEGgqpga--vaplrRYYGEglv--pgwARGS--AAYL------------VGLDaGrPVAGEALERLL-RGEH 82   Frankia casu...
WP_013428016    22 vravVAYVEGgqpgt--aaglaGYYDRas----grARGQ--LAEL------------VGLRgE--VSSEALSRLL-EGRH 78   Pseudofranki...
Q8FLG9           8 HGESVAYYEStvdacvaergpdGYYSEdgrrpataWVVSpsSRLEasv------safLGVEsGdVVAGKQVAKWFnSAQA 81   Corynebacter...
1P4D_A          61 PD-GADLSRMQDGSn----------------------------------------------------------------- 74   Escherichia ...
WP_014375602    64 PEtSEPRGQlrg-------------------------------------------------------------------- 75   Blastococcus...
WP_014743124    64 PSsGESRGWlrd-------------------------------------------------------------------- 75   Modestobacte...
WP_007079152    69 VDtDRAKGRlrd-------------------------------------------------------------------- 80   Aeromicrobiu...
jgi:Noca_1102   68 IDtGCKKGRvre-------------------------------------------------------------------- 79  
EON25705        64 LEsRKPKGRlrt-------------------------------------------------------------------- 75  
Q5HXP7          95 ADtGEKWAGAHAN------------------------------------------------------------------- 107  Gluconobacte...
Q2J7P7          83 AVtGRPLLTALGSAgrasppvegqrsagpggglltlaqaarragvsaaylralavrtaamataersasrggdadaggsaq 162  Frankia casu...
WP_013428016    79 AVsGRPLLAAAGSAarahsardacatratsgagpyeagelltltqasalagvsatylrslvaktarahagqaa------- 151  Pseudofranki...
Q8FLG9          82 Ps-GKSLGRrp--------------------------------------------------------------------- 91   Corynebacter...
1P4D_A          75 ------------------------------------------------------------------------RHRPGYDL 82   Escherichia ...
WP_014375602    76 ----------------------------------------------------------------------deHAVRFAEV 85   Blastococcus...
WP_014743124    76 ----------------------------------------------------------------------deHAVRFVEV 85   Modestobacte...
WP_007079152    81 ----------------------------------------------------------------------daSALRFVEV 90   Aeromicrobiu...
jgi:Noca_1102   80 ----------------------------------------------------------------------daNALRFVEV 89  
EON25705        76 ----------------------------------------------------------------------dsNGLRFVEV 85  
Q5HXP7         108 ------------------------------------------------------------------------REISGIDF 115  Gluconobacte...
Q2J7P7         163 gadravhertgaagmrrgpsagsvpgdegravdngvgegrgpwlaavreagtgrwlvsatevdrfcaarvppAVVLGYDV 242  Frankia casu...
WP_013428016   152 -------------ddvsdsparaedgnptreppagqnghaavgglvgvkgvdgrwrvrrdeverwvaarvasAAVLGFDV 218  Pseudofranki...
Q8FLG9          92 ----------------------------------------------------------------------gaSGVPGFDL 101  Corynebacter...
1P4D_A          83 TFSaP-KSVSMMAMLG-GDKR---LIDAHNQAVDFAVRQVEA-LAST-RVMt--DGQSETVLTG-NLVMALFNHDTSR-- 150  Escherichia ...
WP_014375602    86 VVNgP-KTWSLAAALH--PDIaeaYGAAQDRAAEQIIGWLSQhATT--RVGp--RGGQVQVPLE-VLEAATVRHYTSR-- 155  Blastococcus...
WP_014743124    86 VVNgP-KTWSLAAALH--PDIaeaYEAAQDRAAGQIVAWLSQhATT--RVGp--RGGQVQVPLE-VLEAATVRHYTSR-- 155  Modestobacte...
WP_007079152    91 TVNgP-KTWSLAAALH--PEIsaaLDAAQDEAAAQIIGWVAEhATT--RVGp--RGRQVQVRVE-QVEAAVIRHHTSR-- 160  Aeromicrobiu...
jgi:Noca_1102   90 TVNgP-KTWSLAAALH--PEVseaLDGAQDRAAEQIVGWLALhATT--RVGp--RGRQVQVPVE-RIEAAVIRHYTSR-- 159 
EON25705        86 TVNgP-KTWSLAAALH--PDIsaaLDEAQDRAATEIVGWVAQhATT--RVGp--RDRQVQVPVE-RIEAAVIRHYTSR-- 155 
Q5HXP7         116 T-AaPdKSVTLAAEFAsTKAEealIWSAIHQANDRAMAFIAKeIGIA-RRG---KGGVSYNEGG-DVGWVSFRHYTARpv 189  Gluconobacte...
Q2J7P7         243 TCSaP-KSVSLLWAFG-DEEIrrdVAAAMDAGVEAVLGYLERhATVG-TVA-------GRNRPGvGVAAVSYPHEVSR-- 310  Frankia casu...
WP_013428016   219 VCAaP-KSVSLLWAFG-DEVLradVAAALDAAVDATIGYLERhAAFG-KIG-------GHNRPSrGLAVASYLHDVSR-- 286  Pseudofranki...
Q8FLG9         102 TFCaP-KSVSLVWGFG-DSSMkkiVDEAHAQAVSAALSYLSEhAGYTrKASehdPNEMILARVS-GLSGVKYEHKTSR-- 176  Corynebacter...
1P4D_A         151 ------------D------QEPQLHTHAVVANVTQ---HN----------G----EWKTLSS----------DKvgktgf 185  Escherichia ...
WP_014375602   156 ------------A------NDPHWHLHLQLLSRVFa-------------aG----KWRGLHTvgirdflgavNG------ 194  Blastococcus...
WP_014743124   156 ------------A------EDPHWHLHLQLLSRVFa-------------aG----KWRGLHTvgirdslgaiNG------ 194  Modestobacte...
WP_007079152   161 ------------A------GDPHRHLHLQINARVFa-------------hG----RWRGIHSvgardsleaiNG------ 199  Aeromicrobiu...
jgi:Noca_1102  160 ------------A------GDPHRHLHLQVNARVFa-------------aG----AWRGLHSvgvrdmieaiNG------ 198 
EON25705       156 ------------A------GDPHRHLHLQINARVWa-------------sG----TWRGLHSvgirdsieaiNG------ 194 
Q5HXP7         190 mkiqdgaqgptaAvevlvpGDPQAHIHNIMFNAVAt--ES----------G----HLGSLDS----------KRv----- 238  Gluconobacte...
Q2J7P7         311 ------------S------DEAHLHVHSIVVNATAvpdLDeqgrpvadeqGrgrvDWRALDG----------EV------ 356  Frankia casu...
WP_013428016   287 ------------S------VEAHLHVHNIVINAVVvaaGDde-------pGasgwEWRAVDG----------EV------ 325  Pseudofranki...
Q8FLG9         177 ------------A------GDPHVHSHVLLSNRQLc--PD----------G----KSRTLDS----------KS------ 206  Corynebacter...
1P4D_A         186 ienVYANQIAFGRLYREKLKEQVE-ALGYETEVVgKHGMWEMPGVP----VEAFSGRSQTIREAVGE-----------DA 249  Escherichia ...
WP_014375602   195 ---IGHAAMACDPELNAAFA-----THGYR-----KDGTGEIRELAd--yVGPFSARHAQIARNVDRyeaewtaahpgES 259  Blastococcus...
WP_014743124   195 ---IGHAAMACDPELNAAFA-----AHCYT-----KDATGEILELAd--yVGPFSARHAQITRNVDRyerewatahpgDH 259  Modestobacte...
WP_007079152   200 ---IGHAAVATDPGFRAALA-----AHGFTF----DPITGEINELAp--yAGRFSARAAQIARNVDAfeaqwraahpgQE 265  Aeromicrobiu...
jgi:Noca_1102  199 ---IGHAAVATDPEFRAVLA-----ARGFTL----DPETGEIEQLAp--yVGAFSARTSQIHRNIDRyeaewrrehpgEE 264 
EON25705       195 ---IGHAAVATDPQFRSVLA-----AHGLSL----DPETSEIRELVp--yVGAFSARTAQIRRNVDRyeaawraehrgEE 260 
Q5HXP7         239 ---TGMTSHMFGGYFQAELASELR-KLGIRVdvdaRGKAVVLNGIPee-aRELFSKRSKQAERMAKAfvkrq--ggdwKA 311  Gluconobacte...
Q2J7P7         357 ---FLSHVKTAGYVGAAALRHELSrRRGLAWgp-vRNGVAELAAFPaq-lLAAFSTRHGEVQAEYAQlvadgltpggvTE 431  Frankia casu...
WP_013428016   326 ---LLSHVRTAGFVGAAVLRRELAvRRGLEWgp-vRNGVAELAAFPad-lLAAFSTRHREVAEEFAQivaaglepsgaTM 400  Pseudofranki...
Q8FLG9         207 ---VYHEARAAGMLYQSVLRSTLSkNLGVQWAEVsn-gCAEIAGLDapevIEAYSTRMREINDWKHEnga---------- 272  Corynebacter...
1P4D_A         250 SLKSRDV-----AALDTRKSK-QHVDPEIKMAEWMQTLKE 283  Escherichia coli
WP_014375602   260 PGPVLRRawdarAWADGRPDKvTAQPGIGLAERWRTELSA 299  Blastococcus saxobsidens
WP_014743124   260 PGPALRRawdarAWVDGRPDKvTAQPGVRLEERWRADLSA 299  Modestobacter italicus
WP_007079152   266 PGPKLRRtwdrrAWSQARPDKvIPTDGAAMVEAWNDDLHE 305  Aeromicrobium marinum
jgi:Noca_1102  265 PGPRLREawdrrAWADARPDKvVPTGGADLVARWNDELRA 304 
EON25705       261 PGPRLREgwdrrAWAEARPDKiVPIDGRELVDGWNSEVRD 300 
Q5HXP7         312 MSAEQKFkilhqANLTYRSNKyTGRNERDI---WREEADE 348  Gluconobacter oxydans
Q2J7P7         432 AA----------AQRGSRAAK-KVLADAQVRRIQHERLTA 460  Frankia casuarinae
WP_013428016   401 TA----------AQRGSRAPK-TVLADETVRRLQVERLEE 429  Pseudofrankia inefficax
Q8FLG9         273 ----dfAgasrmGQAITRRVKdTDTPMEELHARWMAHSVG 308  Corynebacterium efficiens
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