7UNC,7ENA,8H6R,2XPL,7XN7,3O8Z,7XGW


Conserved Protein Domain Family
Med26

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pfam08711: Med26 (This model is not part of the current CDD release)
TFIIS helical bundle-like domain
Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species {1-2]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Mediator exists in two major forms in human cells: a smaller form that interacts strongly with pol II and activates transcription, and a large form that does not interact strongly with pol II and does not directly activate transcription. Notably, the 'small' and 'large' Mediator complexes differ in their subunit composition: the Med26 subunit preferentially associates with the small, active complex, whereas cdk8, cyclin C, Med12 and Med13 associate with the large Mediator complex. This family includesthe C terminal region of a number of eukaryotic hypothetical proteins which are homologous to the Saccharomyces cerevisiae protein IWS1. IWS1 is known to be an Pol II transcription elongation factor and interacts with Spt6 and Spt5.
Statistics
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PSSM-Id: 518452
Aligned: 387 rows
Threshold Bit Score: 31.7247
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
7UNC_O        29 DLLKELKNIpm--tlE-LLQSTRIGMSVNAIRKQs-tDEEVTSLAKSLIKSWKKLL 80  human
EFH46266     229 MILNDFRIDldqdsrReQLIKSGLGKVIMFLSKSdeeTTPNRRLANDLINKWGRII 284
XP_002896850 229 EMVSKMPVF------KeHLKRSGLGKVVMVLMKHpqeTPENKELCRSLVERWSRAV 278
CBN77764     450 KLIENLPVq------VdHLKRSGIGKVVMGLLNCreeTTENKRRLRQLVSKWNRPV 499
Q7RJA6       378 KVIQQLPIT------IkSLRGSQLGKIMTFLHTHkdeTDENKKIIRNILQNWMGPI 427 Plasmodium yoelii yoelii
Q5CRX1       230 KLISNIPLG------EeDITSTELGKTLCKLWKNsaeTIENRQIIRTLIQRWVRLI 279 Cryptosporidium parvum
XP_002139353 241 NLLNNLPIK------EdDLIGTTIGHRLCELWQNpseTQENRQIIRSLVQRWLKTL 290
XP_020431561 467 KALSLLPVA------RdQIGRSGVKKMVMAINKSeseTPVIKKLAYDVIHKWNLPS 516
XP_004356184 404 RILTLLPAN------RdAIRGTSIVRFIQAVQNNdneSPLIRKLAYDAMHKWSAPG 453
XP_002366389 310 HVLMKLPIS------SqELMNNDLGRVLVLLWHHpdeSDENRVLIRQLIQRWTRPM 359 Toxoplasma gondii ME49
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