1QZ8,2J97,5C94


Conserved Protein Domain Family
CoV_NSP9

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pfam08710: CoV_NSP9 (This model is not part of the current CDD release)
Coronavirus replicase NSP9
Nsp9 is a single-stranded RNA-binding viral protein involved in RNA synthesis. Several crystallographic structures of nsp9 have shown that it is composed of seven beta strands and a single alpha helix. Nsp9 proteins have N-finger motifs and highly conserved GXXXG motifs that both play critical roles in dimerization. The conserved helix-helix dimer interface containing a GXXXG protein-protein interaction motif is biologically relevant to SARS-CoV replication.
Statistics
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PSSM-Id: 518451
Aligned: 8 rows
Threshold Bit Score: 179.212
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1QZ8_A    1 NNELSPVALRQMSCAAGTt-QtACTDDNALAYYNNSKGGRFVLALLSDHQDLKWARFPKSDGTgTIYTELEPPCRFVTDT 79   Severe acute respir...
P0C6V0 4208 NNELMPQKLRTQVVNSGS--D-MNCNTPTQCYYNTTGTGKIVYAILSDCDGLKYTKIVKEDGN-CVVLELDPPCKFSVQD 4283 Murine hepatitis vi...
P0C6V3 3673 NNELMPHGVKTKACVAGVd-Q-AHCSVESKCYYTNISGNSVVAAITSSNPNLKVASFLNEAGN-QIYVDLDPPCKFGMKV 3749 Avian infectious br...
Q98VG9 3778 NNEILPGKLKEKAVKASAtiD-GDAYGSGKALMASEGGKSFIYAFIASDSNLKYVKWESNND--VIPIELEAPLRFYVDG 3854 Feline infectious p...
P0C6U2 3825 NNEIMPGKMKVKATKGEG--D-GGITSEGNALYNNEGGRAFMYAYVTTKPGMKYVKWEHDSG--VVTVELEPPCRFVIDT 3899 Human coronavirus 229E
P0C6U8 4118 NNELSPVALRQMSCAAGTtqT-ACTDDNALAYYNNSKGGRFVLALLSDHQDLKWARFPKSDGTgTIYTELEPPCRFVTDT 4196 Severe acute respir...
2J97_A    1 NNEIMPGKMKVKATKGEG--D-GGITSEGNALYNNEGGRAFMYAYVTTKPGMKYVKWEHDSG--VVTVELEPPCRFVIDT 75   Human coronavirus 229E
5C94_A    6 NNELMPHGVKTKACVAGVd-Q-AHCSVESKCYYTSISGSSVVAAITSSNPNLKVASFLNEAGN-QIYVDLDPPCKFGMKV 82   Avian infectious br...
1QZ8_A   80 PKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 113  Severe acute respiratory syndrome-related coronavirus
P0C6V0 4284 VKGLKIKYLYFVKGCNTLARGWVVGTLSSTVRLQ 4317 Murine hepatitis virus strain A59
P0C6V3 3750 GVKVEVVYLYFIKNTRSIVRGMVLGAISNVVVLQ 3783 Avian infectious bronchitis virus (strain Beaudette)
Q98VG9 3855 VNGPEVKYLYFVKSLNTLRRGAVLGYIGATVRLQ 3888 Feline infectious peritonitis virus (strain 79-1146)
P0C6U2 3900 PTGPQIKYLYFVKNLNNLRRGAVLGYIGATVRLQ 3933 Human coronavirus 229E
P0C6U8 4197 PKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ 4230 Severe acute respiratory syndrome-related coronavirus
2J97_A   76 PTGPQIKYLYFVKNLNNLRRGAVLGYIGATVRLQ 109  Human coronavirus 229E
5C94_A   83 GDKVEVVYLYFIKNTRSIVRGMVLGAISNVVVLQ 116  Avian infectious bronchitis virus (strain M41)
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