Conserved Protein Domain Family
YcbB

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pfam08664: YcbB 
YcbB domain
YcbB is a DNA-binding domain.
Statistics
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PSSM-Id: 489785
Aligned: 25 rows
Threshold Bit Score: 133.909
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_014368505 160 ANDVLSELGMLGESGSRDLLDMV-----QYLERWERArGSDyaFPSLGEVFEEVALARLgaSVSPADLRKEVKAAEQRVR 234 Paenibacillus m...
WP_015391708 159 LMSIFSDINIVGTAGVDELKLVIlnivsKKQVSPs-------kPYQLKGVYMDVAREL---YG-DMLASINCKSMEQRIR 227 Clostridium sac...
WP_013275287 158 INKIFSDLGIIGVAGSNELLKVIytvheLKLENPn-------aEYQLQDIYEKVLEE----DD-DNIEKLNVKSLEQRVR 225 Thermosediminib...
WP_014966748 153 IKKIMQRIGIMGESGSQDIINIT-----KYLIDt--------kQSTFGYTAKELCSKF---T-------DQPKTMEQRIR 209 Gottschalkia ac...
2_pfamImport   2 AQSILRFLGITAGNGAPAINKLV-----NTMIE------------------REISFDEVnfEEFFQCDEHGKKIIFQRIR 58 
WP_022131401 168 LRSILQKLGIIGESGSADIITLV-----DYMIEq--------gPESGKFTVSELCSKF---------SPNNSKSMEQRIR 225 Negativibacillu...
WP_013387425 158 INIVLGELGILGDLGCNDISDGI-----LWIKDQs---DKSkqQYKLSDVYTFLRSVH---EK-NEGIEINTSTIEQRIR 225 Ilyobacter poly...
WP_012064281 160 IRKLLAQIGILGEAGCQDIIEIV-----MWMREKGSLdNSIqsQFKLSHAYSYLKENY---ES-KQGTPTNIGSIEQRIR 230 Alkaliphilus me...
WP_025437034 160 VKKVLAQLGILGEAGCTDIIEIV-----AWLEEMGCGkQGSqyNYKLSDAYSHLKTKY---ES-EETGEVNKSAIEQRIR 230 Peptoclostridiu...
WP_013777907 156 VGFFLADLGILGETGSEDIKIIIenhekFWq-----------nINNLQDIYQYLKQYY---ENYDEKKSTDIKAIEMRIR 221 Tepidanaerobact...
WP_014368505 235 RAVAEAQSHLASLGLIDYSHPKFEQYAASLFDLSEIRKKMKEMEEGDSSAagssVRTNTKKFVQGL 300 Paenibacillus mucilaginosus
WP_015391708 228 RTITKAMTSLASFGIENEENSLYKEYAYSLFDIKQVKQEIKHLKHPSFIQ----GKINTKKFIEGI 289 Clostridium saccharoperbutyla...
WP_013275287 226 RTIQKALQTLAELGLSDFDNDIFLEYSTLLFDFKQVRQQMRHIENPKEEP----GKINIKKFIEGI 287 Thermosediminibacter oceani
WP_014966748 210 RTATVGMINLANIGIEDYMNEIYNEYSNGLYNFEQIKIEMDYIRGKSNKR----GTVNVKKFIDGM 271 Gottschalkia acidurici
2_pfamImport  59 RDIKTGLNNLAHMCMDYPENDIILEYANNLYEYKNVHNEISFLKGERTNG----GQVSLKHFFNGL 120
WP_022131401 226 RTVNAGLTNLANMGIEDYSNDTFHDFAGSIYSFEQIRKEMDYIRGKSDSH----GKVSLKNFLNSL 287 Negativibacillus massiliensis
WP_013387425 226 RTISKVLQNISNLGIEDYGNEIFLKYSGTIFDFKEVRKQMDFERGKSPYC----GKISVKKFFEGI 287 Ilyobacter polytropus
WP_012064281 231 RAIKSALKNLANLGIEDYYNDSFVNYSSALFDFAEVRREMDFERGKCNYG----GKISVKKFIEGI 292 Alkaliphilus metalliredigens
WP_025437034 231 RAVKSALSNIANLGIEDYYNDIFVKYASTLFDFGEVRREMDLLRGKSSYG----GKINAKKFIEGI 292 Peptoclostridium acidaminophilum
WP_013777907 222 RAIDKALKNVASMGLEDYNNEQFIRFASTLFDFTEVKKEMDFLRGKSPIS----GKINIKKFLEGs 283 Tepidanaerobacter acetatoxydans
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