Conserved Protein Domain Family
RPAP1_C

?
pfam08620: RPAP1_C (This model is not part of the current CDD release)
RPAP1-like, C-terminal
Inhibition of RPAP1 synthesis in Saccharomyces cerevisiae results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Statistics
?
PSSM-Id: 518384
Aligned: 91 rows
Threshold Bit Score: 64.8645
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
XP_001524747  357 DMRFDFKGNLVQInidkedvtdslnggsregKGEIPTY---------LG-----LHHHSENPHMAGYTLSELAHLSRSTQ 422 
XP_004360357  402 NWRFGFRGELIVN------------------SEDIPTH---------LG-----LHHHGQDAAEAGYTIQELSLLIRSTN 449 
XP_002503780  529 SVRFTLEGVPLN--------------------ADEQPAagrqasrlgSAverdpLRSGTQNPADLGYTTRECLELARSSV 588 
XP_003057932  311 STRYALDGTALS--------------------AEAHADasalanaagSAvtrdpLRA---DGADAGYTLSEALDLSRSSV 367 
XP_001418489  296 HVRFALDGSPLL---------------------DATVDvatgsapapLPterdpLRAG--EGSDIGYTFQEACALTRSSV 352 
EFJ30618      220 SMRFSLDGEVIS----------------------SSNTdmqddsdlsSVaqrdyLRAEG-DPSALGYTIKEAALLSRSTV 276 
XP_015580388  435 RLRFSLEGSVIAd------------------ESETGDItiddkdgvvTAserdfLRTEG-DPAAAGYTIREAVQLTRSVI 495 
XP_006574957  412 ELRFSLVGDVVDserv---------------------------svydNAnerdyLRTEG-DPGAAGYTIKEAVALTRSVI 463 
1_pfamImport    1 ELRFSLDGNIVKs------------------EFDVSKSgntssyaeqNLserdyLRTEG-DPGAAGYTIKEAVALARSLV 61  
Q8GYU3        318 DLRFSFDGNVVEe------------------DVVSPAEtggkwsgveSAaerdfLRTEG-DPGAAGYTIKEAIALARSVI 378  thale cress
XP_001524747  423 PGQRCISIQTLGRLLHKLG 441 
XP_004360357  450 HSQKTTALRILSDIFANVH 468 
XP_002503780  589 PAQRSVGLNVLTRVLAHAR 607 
XP_003057932  368 PAQRVAGLTLLARVLARAK 386 
XP_001418489  353 ASQRTIGLQIIGKILKLAR 371 
EFJ30618      277 PAHRAAGVQLLGTIFSNAA 295 
XP_015580388  496 PGQRALALHLLASVLDKAm 514 
XP_006574957  464 PGQRTLALHLLSSVLDKAl 482 
1_pfamImport   62 PGQRTFAFHLIASVLDRA- 79  
Q8GYU3        379 PGQRCLALHLLASVLDKAl 397  thale cress
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap