8HPO


Conserved Protein Domain Family
Sds3

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pfam08598: Sds3 (This model is not part of the current CDD release)
Sds3-like
Repression of gene transcription is mediated by histone deacetylases containing repressor-co-repressor complexes, which are recruited to promoters of target genes via interactions with sequence-specific transcription factors. The co-repressor complex contains a core of at least seven proteins. This family represents the conserved region found in Sds3, Dep1 and BRMS1-homologue p40 proteins.
Statistics
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PSSM-Id: 518369
Aligned: 56 rows
Threshold Bit Score: 96.2459
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
8HPO_H        182 ALKEITDIEYKFAQLRQKLYDNQLVRLQTELQMCLEGSHPELQVYYSKIAAIRDYKLHRAYQRQKYELSCINTETIATRT 261  Saccharomyces...
CCE85078      302 AVEELISIETAFASLRDKLYKDKLELLEHELQLCLDGSHPELSKVYHKVNQFHRESMKQANANLTYRLRCIDIETVATRT 381 
XP_001384040  105 AIEELISIESAFAELRDKLYQDKLNLLEHELQLCLEGSHPELSKIYYKVNSFYQDHLKLANSNLAYKLKCIDKETIATRT 184 
EMG50849      386 AIEELIAIEANFAEVRDKLYNDKLALLERELQLCLEGSHPELSKIYGKINGFYQDGLKLANSNLSYKLKCVDKETIATRT 465 
XP_002490626  314 ALSSLNELEVDFAKLKDMIYGNQMTKLQYELELCLKGSHPEFVNIVDKINRNFDAKLNRLIMTQKYQLQCIDNQTKATRL 393 
XP_013935516  110 ALEEIKNIEIEFALLKDKLYETQMNKLLFELELCNSNKHPDFLNYSNMIENNFQAKVARYVNLQKYKLKCLDNQTRATRV 189 
XP_003334355  673 ALEAMVKIEIMFAQVRDRLYAERLSDVYRETAAVQHGSHPELNEYYQLLERKRDARLSLAHKIFNLKEIELNKKREAATN 752 
ESK84763      447 ALEVLASIELRFALVREKLYVEKMQSLAWEESLVEDGTHPELIYLQSELSRRKDKRLELAARKRTYEFSHVSRKRKLEED 526 
XP_001750024   25 hLEKLQEIETEYTRIKQEVLDKKIAAVSAALDRLQENKHEEVHARLLQLEDEIEKRMKDAARKRDKQLDSAKAWLDAERI 104 
3_pfamImport    1 CLDEMTTIEKQFMDIRDQLYRERHTQIMQKLDEVNAGTAPEYLQQLLALETSKQVRMQVSDIYQRLRLNALKTNLEAETQ 80  
8HPO_H        262 FIHQDFHKKVTDLRARLLNRTTQTWYDINKERRDMDIVIPDVN------YH-VP-------------------------- 308  Saccharomyces...
CCE85078      382 SIHQNFLKKLMDTRNDMISDVTYMWYKINKERNQMDQ------------VVpDFnfs----------------------- 426 
XP_001384040  185 SIHQDFLKNLMEAKNSMITSTTSLWYKINKERNQIDQ------------LVpDYnfs----------------------- 229 
EMG50849      466 SIHQNFMRNLMDTKNTMITDTTSLWYKINKERNQLDQ------------LVpDYnfs----------------------- 510 
XP_002490626  394 QLHQQYMKDAQDLKLRSISKTTSKWYEINKERRHLDNVIL---------GVpDYyq------------------------ 440 
XP_013935516  190 AIHQQFIKCCQDLKNEEITNITSNWYEINKERRALDNVTL---------NLpDYyq------------------------ 236 
XP_003334355  753 SVWTRWYEAKTELHDSMIVETQKQMKQLEREKCQPDLRYNVEVqllprpIIpRHnpgrrsrkrarlemdetneellaiql 832 
ESK84763      527 ATWSWWKLAKDELQTDMIAETNRKKRRLERDRRQMER------------------------------------------- 563 
XP_001750024  105 ASINSYKEQFRYAIRNRFDALSCLRYNLKLAKRDMDAdpppfearvfk-------------------------------- 152 
3_pfamImport   81 ANAQHLKNEKQILMGRIEFDLSEKMHRLEEDRENVDLSNq---------------------------------------- 120 
8HPO_H        309 ----IKLDNKTL---------ScitgyasaaqlcypgepvaedlA-----------------------------CESIEY 346  Saccharomyces...
CCE85078      427 --aiPKIPNYTIpaqseedpaA----------------------Ssysssl------------------tkkiaKQNTlv 464 
XP_001384040  230 --atPMIPNVTVgpvd-dsavI----------------------NggfsytnlgtngsvdyvevdtapltkkamKQNMli 284 
EMG50849      511 --aiPAIPNVTIpaedclpngyie--------------------------------------nvadaplpkrllKQNTii 550 
XP_002490626  441 --fnPDLASAAKknqta--------------------------------------------------------------- 455 
XP_013935516  237 --ynGDITAANVnsqsa--------------------------------------------------------------- 251 
XP_003334355  833 htaiAKRATVNLstltseeswA----------------------D-----------------------------LSVMKP 861 
ESK84763      564 ------------------------------------------------------------------------------PV 565 
XP_001750024  153 ----------------------------------------------------------------vksripiwngDANRAF 168 
3_pfamImport      --------------------------------------------------------------------------------     
8HPO_H        347 RYRanpvdklevIVDRMRLN-NEISD-------------------------------------LEGLRKY-------FHS 381  Saccharomyces...
CCE85078      465 ----------elVQHRNNVN-QQLGI-------------------------------------LNGLVQ--------FHG 488 
XP_001384040  285 ----------elVQQRNSIN-SQLGV-------------------------------------LNGLIE--------FHG 308 
EMG50849      551 ----------qlVQQRNSIN-EQLGI-------------------------------------LNGLVE--------FHG 574 
XP_002490626  456 -------lvqelANQRRNFQ-QELGV-------------------------------------LTALQQ--------NYR 482 
XP_013935516  252 --------inrlVVQRNALY-HELSS-------------------------------------LKGIEKY-------TGG 278 
XP_003334355  862 QSRnahldpvniLCAPQSMA-TYFRDdpyepttepskkllpslgsgdkldnhhnlardpaiigAEKLIALnpklihsRAS 940 
ESK84763      566 PIRhipgmpmeiLTAPPTLR--QLIDnppfgsrefqqprlknkhrnrevhtnvnassgkrdmgTNSAGALv------PLA 637 
XP_001750024  169 VPFepgtqpaslQAELHAVKlKELEEeqnseai-----------------------plaveskDEVISTTl------SNG 219 
3_pfamImport  121 -----------lWGDGRDLDpif--------------------------------------------------------- 132 
8HPO_H        382 FPG----------------AP--E-----------------------------LNPLRDSEINDDFHQ 402  Saccharomyces cerevisiae ...
CCE85078      489 FPCaiasglndd--------------------------------dqipssellLKSATNEEILEDLKS 524 
XP_001384040  309 FPSaiisslses--------------------------------detvgeellLKKATEEEVNEDLKA 344 
EMG50849      575 FPSainstfneed-------------------------------idgsphellLRKATEEEINDDLRA 611 
XP_002490626  483 FPSsl----------------------------------------------nhLTAAREDEIESDLlr 504 
XP_013935516  279 FPSsl----------------------------------------------ndLKSCTGEEVQQDLKE 300 
XP_003334355  941 YPSqvqslsspssklhsrrLNngLdgltnihts------------sssrtvrnSNRLTSEQIEPDlsr 996 
ESK84763      638 YPE--------------------------------------------------LPTLSSADVGNDLDy 655 
XP_001750024  220 QPArkarkti------------------------------------swtgpciIYQLQEHELEDDLRr 251 
3_pfamImport  133 ---------------------rkKkkkeevypsfsfggvkrkkkpvtvtgpyiVYMLRDCDIMEDWTA 179 
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