6VVO


Conserved Protein Domain Family
RFC1

?
pfam08519: RFC1 (This model is not part of the current CDD release)
Replication factor RFC1 C terminal domain
This is the C terminal domain of replication factor C, RFC1. RFC complexes hydrolyze ATP and load sliding clamps such as PCNA (proliferating cell nuclear antigen) onto double-stranded DNA. RFC1 is essential for RFC function in vivo.
Statistics
?
PSSM-Id: 518311
Aligned: 128 rows
Threshold Bit Score: 78.382
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
6VVO_A        362 ICDGDLVDSQIRS--KQNWSLLPAQAIYA----SVL-P-------GELMRGYMTQFPTFP---SWLGKHSSTGKHDRIVQ 424  human
A8AC24        291 VSRADVIYGRIRR--TMNWSLLPY--FFN----ALG-PgvalaktKYHKRA----RWSYPekiVLLAR---TKEERRVRD 354  Ignicoccus ho...
XP_001025348  959 MAESDLLQDSIRS--GGNWSLLQNVGFLT----SVYvP-------QQVCSK----CNTYPqmtQHLGKFSSQRKTSRLIR 1021
Q22DN2        853 IAQSDLLSKSIRQ--SGNWSLLPNFAFTS----CIY-Pcdkv----------cedKPIYPrfpEWLGKFQTTKKTTRELR 915  Tetrahymena t...
A0CPS3        694 LADADVLNSKVR---SQMWGLMPNVGFLS----TMY-P-------TQILKGNLLSKVNFP---QMLGRISSENKIKRQIL 755  Paramecium te...
A0EHK8        713 IAEGDIISKKIRR--DQQWSLMPSFGFLS----SVY-P-------SCIVGE----QMDFPkfpQWLGKNSTASKIRREGH 774  Paramecium te...
ELQ75739      326 ISLAD---TYLRKmgSNDWSLLNQYAVFG----ALI-P-------AQNIKINR--RIEFP---KILGNTSKGNKHNKIIQ 385 
EPR79382      385 ISMGDIVDGIRRT--TMDWSLLPLHGFFS----TAL-P-------TQTVLK----KIEFT---KFLGKLSSTNKNKRVIN 443 
XP_001322740  500 MSDGDTVQTILNQ--DQNYDLLIPMGIIG----CVTpPavapvkvTSNMR--------FP---ECYLRASKMNKNNRLMQ 562 
XP_001300705  436 MAIGDVLNNDIYQ--NMEFQTLPAHGFFSavapSILsP-------GKDWGG----MAKFP---MYFGKNSRHKKLERYIN 499 
6VVO_A        425 DLALHMSL-RTYSSKRTVNMDYLSLLRDA-LVQP---------LTSQ-GVDG---VQDVVALM--DTYYLMKED-FENIM 486  human
A8AC24        355 ELASHLAL-LTHSSKSYVRREIIPMLQFIaQVNPnyfarlalgLRL---------SDPMIKYLakSKYQLVKKY-VEELK 423  Ignicoccus ho...
XP_001025348 1022 QLRMQLAQ-NISGNRQAVQFDYINPLMEL-ILYQ---------LEN----NGkqgVDNVISIM--EEYNITPDLlKEHFI 1084
Q22DN2        916 EFRVSLSK-SISGSRFAVKFDYVPFLLKI-ILSH---------LKK----GKnsdIETVLDYL--EYYNIKPQHlKEHLN 978  Tetrahymena t...
A0CPS3        756 EVKEAFAQqTYLTNTKAIKFQYIEPYAFI-IIQS---------LAS----AGlscIDEVVSLL--RNYNLNIQQfEECIV 819  Paramecium te...
A0EHK8        775 QIKNRIA--PITYLTSDIRL-YSHYLFQL-IKQF---------LELkivRNDkdaVWSVVQIM--EEYRITPDQlKEDLH 839  Paramecium te...
ELQ75739      386 TFHFHI---LSRCDPTEFYFYDMPLLIKT-YIAN---------LNDg-------hIDKNVQFL--VENKLLKSDcDDGMS 443 
EPR79382      444 KIFHHLFK-VNNSSIEETMLYYFPVLNQYyITQM---------THGD--------TEDIINLL--LKNFLLKED-LDEIY 502 
XP_001322740  563 EFTTRSAR-VLQSTPSTMRESTADILSAK-MQNY---------IQDQ-N------TQELKNLL--ELLEITPED-AENLK 621 
XP_001300705  500 EMGRRISR-TTNLPTSEINDTTVPLLLMR-AKNY---------LSG-----RkpnIDGFLDML--DSFEMTLDD-YEHLG 560 
6VVO_A        487 EISSWg------GKPSPFS---KLDPKVKAAFTRAYNK 515  human
A8AC24        424 SSRTV-----------------KAEEQTKAKEVVKELK 444  Ignicoccus hospitalis KIN4/I
XP_001025348 1085 TVPYKsdfeqrlK---------DIPTTIKTNLTKTYNK 1113
Q22DN2        979 DLQYPknd--yyG---------VVSSDIKTKLTKEYNK 1005 Tetrahymena thermophila SB210
A0CPS3        820 GSLALfpkrdlmT---------EIASQVKASLNKAMKQ 848  Paramecium tetraurelia
A0EHK8        840 DQVFNplkdnllS---------TINAQVKTQLTKMYNK 868  Paramecium tetraurelia
ELQ75739      444 VYGWEk----------------NVSTKGKSAMTRAYKK 465 
EPR79382      503 TLFRSt---------------iKFDSKIKSKLTREYKK 525 
XP_001322740  622 SIVSFqsk-ekgKSASQDD---KASQKFVTTFQKKFSK 655 
XP_001300705  561 ELYTY-------GPPAMAAkslPGTPAVKGAVTRGYRQ 591 
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap