5XOB,3U02


Conserved Protein Domain Family
TiaS_FLD

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pfam08489: TiaS_FLD (This model is not part of the current CDD release)
TiaS FLD domain
This is the FLD domain found in tRNA(Ile2) 2-agmatinylcytidine synthetase TiaS. TiaS is an archaeal ATP-dependent agmatine transferase that catalyzes the formation of 2-agmatinylcytidine (agm2C) at the wobble position (C34) of tRNA(Ile2). This modified base specifically recognises AUA codons. TiaS consists of four domains, the TCKD domain (pfam22641) at the N-terminal followed by the FLD domain, an OB fold domain and a zinc ribbon domain (ZRD) domain at the C-terminal. This domain is responsible for agmantine binding.
Statistics
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PSSM-Id: 518288
Aligned: 98 rows
Threshold Bit Score: 30.7638
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5XOB_Z       139 GRGLIGALAAVGAE--LE----D-FTLeliayryperfgtereydeesffdmdyelypqtfdnvdWCNDVVVCIPNTPCP 211 Archaeoglobus f...
Q8TYE9       163 DTEEEGATWSAVDVicRRledeAgVFY--------------------------------------SRHVTVQLYPKTPHR 204 Methanopyrus ka...
WP_012106134 151 DTAEAGATWTLVHNiaRAvedeQ-SAY--------------------------------------LSHTIVQLFP-VAYR 190 Methanoregula b...
Q2FKU4       151 DTPEEGATWTLVHNiaRTvadkR-HRY--------------------------------------LSHTIVQLFP-VPFR 190 Methanospirillu...
A0B672       152 DSKTTGATWSLVHNisEKvdryE-ARY--------------------------------------ISHSLVQLFP-VPTK 191 Methanothrix th...
Q8TPD2       189 DSKDVGATWTLTHNiaKEldcqE-AVY--------------------------------------LSHSLVQLFP-VPEK 228 Methanosarcina ...
WP_015324162 153 DSKETGATWTLTHNiaKAldcpE-AVY--------------------------------------LSHSLVQLFP-VSAR 192 Methanomethylov...
WP_013898295 153 DTKYEGATWTLCHNiaNSldsaD-KTY--------------------------------------LSQALVQLFP-VPEK 192 Methanosalsum z...
WP_013194056 153 DTKEKGATWTLTHNiaDAlncsE-SVY--------------------------------------LSHSIVQLYP-VSSK 192 Methanohalobium...
WP_013037186 153 DTKETGATWCLTHNiaKEldcvE-SVY--------------------------------------LSHSLVQLFP-VSAR 192 Methanohalophil...
5XOB_Z       212 --------VLYGIRGESV-EALYKAMESVKT--EPVDR--RMIFVTNHATDMH 251 Archaeoglobus fulgidus DSM 4304
Q8TYE9       205 trncaavvVELGVPTKRV-ERVKREFLRMLKevSFSDHtcAAFWDRLEFPREL 256 Methanopyrus kandleri
WP_012106134 191 tkncvslvTEFATTEP---ERLIERFRELLQkyTLSQKtgMAVYTGFSPSDEL 240 Methanoregula boonei
Q2FKU4       191 tkncvgvvAEFASSNP---EELARRFSELLMqyTLSKEtgMAVFTGFSPD-RL 239 Methanospirillum hungatei JF-1
A0B672       192 tqncvstaVEFACIPGRE-RGMIEDFRNLLEryTVSDEtgMVVCRSFDPS-ML 242 Methanothrix thermoacetophila PT
Q8TPD2       229 tqncmstvLEFGCVDKKAkEGLVSSFKRTLQkySASREtgLVVLSDFYAK-GL 280 Methanosarcina acetivorans
WP_015324162 193 tqncvstvLEFGCVDAIStKELLESIKAALLkySVSDEtgMVVLRNFNAH-EI 244 Methanomethylovorans hollandica
WP_013898295 193 tqncvstvIEFGCTNNNAkETLLQEFKKALLkySVSNEtgMVAITSFDPV-DT 244 Methanosalsum zhilinae
WP_013194056 193 tqncvstvLEFGCVDENAkNKILQEIKSALLkySVSDKtgMVAFSGFDAV-DI 244 Methanohalobium evestigatum
WP_013037186 193 tqncvstvLEFGCVDERAkNTLLEDIRNALEkySASQDtgMVVLDSFNAS-SV 244 Methanohalophilus mahii
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