Conserved Protein Domain Family
SNF2_assoc

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pfam08455: SNF2_assoc 
Bacterial SNF2 helicase associated
This domain is found in bacterial proteins of the SWF/SNF/SWI helicase family to the N-terminus of the SNF2 family N-terminal domain (pfam00176) and together with the Helicase conserved C-terminal domain (pfam00271). The function of the domain is not clear.
Statistics
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PSSM-Id: 489622
Aligned: 77 rows
Threshold Bit Score: 163.182
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_013281432  162 LELTGHEIDEFFSAVSSIYfinTDFRSRYTEER-PVDIVYSFPPIDLHiekTA-NGINfeassf------------tmfe 227  Butyrivibrio ...
WP_022358737  206 LTLGSAARDRLFDLLEGKE---VQTEDEKGAER-VCRVERKDPRFPVEveaRG-DGIAvtvpsa-----------ltsfr 269  Clostridium s...
2_pfamImport    1 ISLSRMNRERFFEVLQQEE---LEVQLPGGIRS-QLKVQKKDPKLVIRirrYGrDGVEavlegvrtdeegdtepvlaffr 76  
CDD44399      212 LRLSRGDLDRFFGLNTGRA---IRCEDARGQQR-ELTVVREDPDFAVLvkrAGkSGISvtvpsg-----------maafe 276 
CDE56318      235 ILIRGNLMDAFFNAVGEGQ---VTVTRG-MDTV-RLNVREEKPNLLAMvfkTP-DGIDvtmdrq------------rflc 296 
CCZ65265      273 FTLKNELLDAFIEIVADSGt-mLEPST--KNQG-LWYLTDEEYKKTLTltaVE-GGLElkleqi------------psvs 335 
CCY30586      232 MELDGVGIDRFLEAV--KGt-pFHATIGYDMNE-SYIYNGTKRKPKLTlkgGS-AGAFlcmedl------------pmie 294 
CDE67411      283 VMISVQNMDEFFEAVGSQE---FFCRTNWREEK-LWHCQEGMPQYEMKllrKA-DGLKvqmyad------------pify 345 
CDF44679      286 IPLAGVQLDRFMEIMEESQm-pFELETVFTNPI-QYTVQEGEPPIPLSvigVP-SGIRliarsm------------pmte 350 
WP_013484206  237 LTLSSSAFDELFGLLVGQK---VAM-RVDFRNEkHVLFTDENPVLSLQvqeAGdA-FLlslselp----------vflym 301  Ethanoligenen...
WP_013281432  228 gYSNIYFERRRK--IHVIPRKECEDIFPFLKFLSArrt-------enELFISNKDLPLFSSGlYPILEEYFNVSNDGfyp 298  Butyrivibrio ...
WP_022358737  270 gEQRLYVADGLH--LFGCSELYTETMGVFLEQMEQggrecgsrkekrELLVGSRDIPLFYARvLEGMEALGILQSTEidw 347  Clostridium s...
2_pfamImport   77 gERRIYIVTGKT--LCCCSHHFSQAAGTFLEQITKer--------eyRIQAGAKDIPLLYERvLKTLKPYSIMIQEEvdl 146 
CDD44399      277 gEKRLYVADEHH--IFCCSTEYGNVMGIFLTGILGgqe------epgKLLIHERDVPLFYERvLSRMEPLGILSQEGvel 348 
CDE56318      297 gQNYIYFVGTEC--IYKVRRTECEHLEEWLEYSSIfg--------rtGVTIAEQDIPMFVREvLPELRKVCNVQVHSnfd 366 
CCZ65265      336 sLDWNYIFKDQK--IYHSSRHTHQAINLFEDRMTGwc--------ggKSFIAESDLPLFAREmLPELEKKYHIVKEHfyp 405 
CCY30586      295 gDKYYYFYEDGE--IFLGEPLLKGKVSDFFQFLHRqv--------ggDCYIAADELAMFCRDlLPMVRESFDVIPEGfde 364 
CDE67411      346 gRKYLY-FLSEKntIYRVPREEIAEVCDFLEYMERcp--------dgVCEIAKEDIPTFCQGlLPVLEEHFKVKKEEkle 416 
CDF44679      351 gAVYSYAYDSDAgiIYRTSLDTIRRVRGFRTYMNEqg--------gnSVFIAERELPLFCRDlLPELEKHYDVQIQEfrp 422 
WP_013484206  302 gEKNAYVMLGER--LFRCAEDYTAATREF-----Lraft----dkggELTINRKEMPAFCANvLDVICS--HIEVENadm 368  Ethanoligenen...
WP_013281432  299 -skYSPDIPKFKIYIDMPdLVTITCDIQAIY-HEgKpSETtvrLFENsdgssgnngqenesevIIKRNYYQESSIIKLVS 376  Butyrivibrio ...
WP_022358737  348 -ekYRPEALKARFEFDSDsPDELRLRPTLSY-GDfT-FSP---LADEhv------------prEICRDVPAEFYISRLIT 409  Clostridium s...
2_pfamImport  147 -eeYKMEPLKAVFRFDADeKGTLYMEPLLSY-GEyT-FHP---IEDEnl------------psAICRDVPGEFKISQVIR 208 
CDD44399      349 -enWRPEPLEAVFDFDCDeKGRLCLIPRLSY-GDyS-FHP---LDDGdv------------pkSICRDVPGEFRISRLIT 410 
CDE56318      367 eeqYLGKRVKIRIYLDSPePDVITCKAFAYEdGSeEgVNI---FDRYp--------------pGSNADMQDAAVAATRLY 429 
CCZ65265      406 -enYLPEDVSFRLYLDLPqRDIITCDLVADYeNNrE-YHV---FQTDs--------------kKQHRNIRQEAKAAALLS 466 
CCY30586      365 -alYVPPKPEFELYLDRQaMDVVGAKLVAVY-GDnK-YNV---LAKVe--------------pGEVRDLSEELRIKSLVE 424 
CDE67411      417 lqqYLPPQVEFQIYLDAPqHDMIICELLAVY-GEkK-YNV---FADAndi----------hqlSHGRDVRKEAAANQLVR 481 
CDF44679      423 -enYLPDQAQFAIYLDMPeYDEITCRLCAVY-GEeS-YDV---FSVEndaarfi--dmpsgsiSQKRDVQREMEMDAAVS 494 
WP_013484206  369 ldcFRPAPLKAKLYLDMPsSMMVTGTLKYCY-EAtE-INA---MDEqp-------------tpSVQRDVRGEYIARSLVD 430  Ethanoligenen...
WP_013281432  377 QH--FDElddkkgllilsgssdnEDKLFAFIADDIPKLARLCDVYLSDAIKSVNISSAPTVNmgisV-VSDLLELSIVPQ 453  Butyrivibrio ...
WP_022358737  410 RY--FSYwedesge---lvirgdEEALYQVLSEGMPQFQEVGEVWLSESVRHLRVLPPPEVSmgvsL-GGGWLDLKIETA 483  Clostridium s...
2_pfamImport  209 KY--FKCrdpkdgr---lvlkedEKALYHLLDQGMEEFRGLGDVYLSESMKNWKIVETPSVSagvsA-YSGWLELTVDMG 282 
CDD44399      411 RY--FAAreegagr---lflpegEEAVYRLLDEGMEEFRSLGEIRLSGSVKALTIRRPPEISmgvsA-SDGWLTLTVDTG 484 
CDE56318      430 HM--FNAfdpeekc---pvlsdsNDKLYALLTEGIPIMQELGQVFISDEIRNIRVNAAPKIHlgisV-KGDFLEMAVSGD 503 
CCZ65265      467 GY--CNAkddatgl---paivedNDKLYDFLTRGLAECEKIADVYISDRLKKIQVIQPPKVSlgvsL-NGNLLDFNMEAE 540 
CCY30586      425 PY--FNEydhsktf---fviakdEDLLYQLVAGGLQRLSHFMAIYTSDKFRNMKVVNAPSVSvgvsL-KSDLLELKVHSD 498 
CDE67411      482 SC--FSAydarkh----qmllqgADEMYEFLSSGMEDLQKLGEIFVSDRLKAIRVIPSPKVSvgvsL-AENVLELHLNPG 554 
CDF44679      495 AF--FPEydgksqr---rvlredVDAIYEFLQSGIHALEELGEVYISEKMKNVQILNTPAFSmgisL-KSGLLDLTLDSS 568 
WP_013484206  431 KYlpSYNlqhrl------lyvddEERIYALLSEGIAELSTVASVYATDRLGKVTIRKPPAVSvgvrLkS-DLLNVTFDTG 503  Ethanoligenen...
WP_013281432  454 EITAAELNNILGRYRLKKKYYRLSSGDIIDLQTReMDLLYSLNEGLGLSPKdILAGHISIPKYRALFLNELTDDnaiisG 533  Butyrivibrio ...
WP_022358737  484 GIDPAELLQVLSEYRQKKKYYRMKNGEFLQLSGGgLQALDSLTADLGLTKSeFQAGEAKIPAYRAFYLDSLSGDgr---m 560  Clostridium s...
2_pfamImport  283 EFPKEELGRILTAYSQKKKYYRLKSGQFLMLDQGgMFTLTKLAGELGISKKdLQSGTIRLPAYRALYLDHILKEgp---g 359 
CDD44399      485 DLTGGELLKVLDAYTQKKKYYRLKNGEFLKLSDDgFMTIETIREGLSLGKAeLAKKTILLPSFRALYLDQALREdg---h 561 
CDE56318      504 EMSPEQIGEILARYDRRKKYYRLKNGDFIRLENSqISALTEMGQKLHLSKKeFLTGKVKIPKYRSMYVESGLNEly---d 580 
CCZ65265      541 GMSLEQLAFLLSKYNRKRNYYRLKSGQFVAMEESsLDTLAQLSQGLMLTEEqLASGHISLPKFRALYLDAQLRDne---s 617 
CCY30586      499 EMSSEELAYLLSKYDRKKKYIRLKNGDFLDIKEDgISALAEVSEDLQLTEAsLKKGTVVIPKYRAMYLDAALKNnq---l 575 
CDE67411      555 NFGMEELAEILSKYDRKKKFYRLRTGEFMDMDEDgIRVLSELRENLQISEAkLKSGEITIPKYRALYLDTRLKEqd---d 631 
CDF44679      569 ELSMDELAEVLTKYNRRKKYYRLRSGAFLNMQDTrLENLVELVDGLQLTARqIRSGEIQIPRYRALFLDSLAHEeg---a 645 
WP_013484206  504 DFPRDELLDLLKSYRQHKKYHKLSDGSFVTLEDDtLGEVSELAQSLDLSDDqIKNGEADVHRYRAMVLDNILRDsa--lI 581  Ethanoligenen...
WP_013281432  534 TTIDKSKDFKDLVKSYATTGDKLFTVP 560  Butyrivibrio proteoclasticus
WP_022358737  561 KLFQRDEAYGMMVRDLKTAQSVSYAVP 587  Clostridium sp. CAG:43
2_pfamImport  360 ITYYRDQLFKSMVRAVKTVEDSDEPVP 386 
CDD44399      562 ISLKRDSGYKALIRGMKSVEDSDYDVP 588 
CDE56318      581 LDTHYDDSFRRLVSRVKNAALESAAVP 607 
CCZ65265      618 LPVNKSREFRELIRNMKTVEDSDFEVP 644 
CCY30586      576 LSIEKNREFKGMVRNMKTIEDSDYEVv 602 
CDE67411      632 LQVEKNREFRMLIRNMKTAEENDFELP 658 
CDF44679      646 EYIRRDTDFRQLVRNMRVMEDSEYEVP 672 
WP_013484206  582 Q-SDRDPGFKSMLRELRSMDDADIQPP 607  Ethanoligenens harbinense
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