8V97,8V96,3PUM,6GW0,6OTF,8V95,7EQS,3D26,6OU9,3ASR,8J5B,7L5J


Conserved Protein Domain Family
Calici_coat_C

?
pfam08435: Calici_coat_C (This model is not part of the current CDD release)
Calicivirus coat protein C-terminal
This is the calicivirus coat protein (pfam00915) C-terminal region.
Statistics
?
PSSM-Id: 518261
Aligned: 41 rows
Threshold Bit Score: 279.896
Created: 15-Feb-2025
Updated: 25-Apr-2025
Structure
?
Program:
Drawing:
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
8V97_A 306 LTNLNGTPFDPTEDvPAPLGTPDFTGLLFGVASQ-RNvgSN--PNT--TRAHEAVVSTTSSQFVPKLGSVNFGST--St- 377 Norovirus GII
Q91I85 304 LTELDGSPFMAFAA-PAPAGFPDLGSCDWHIEMS-KI--PNssTQS--NPIVVNSVKPNSQQFVPHLSSITLDDN--Vss 375 Human calicivirus HU/...
Q9IV43 304 LTELDGSPFLAFEA-PAPTGFPDLGTSDWHIEMS-LN--SNsqSSG--NPILLRDIQPNSSDFVPHLGSVSVTTA--Idt 375 Human calicivirus HU/...
Q8JXJ0 304 LTELDGSPFLAFEA-PAPAGFPDLGKCDWHVEMSlYQ--DN--NHA--DPIVLHAIEPNSSSFVPHLGSVSFKEN--Vnv 374 Norwalk-like virus
Q8VA02 306 LTELDGSPYHAFES-PAPVGFPDLGECDWHMEAS-PT--TQ--FNT--GDVIKQINVKQESAFAPHLGTIQADGL--Sdv 375 Human calicivirus NLV...
Q66418 306 LTELDGSAYHAFES-PAPIGFPDIGDCDWHMSAT-AT--NN--FTG--SSNEYQILIKQESAFAPHLGHVQADNL--Sag 375 Desert Shield virus
Q6B7R2 304 LSELDGSPYHAFES-PAPVGFPDLGHCDWHVSSF-KA--DQ--NSS--GDPISRLDIKQGASFAPHLGSIEYTTS--Qnp 373 Norovirus NLV/IF2036/...
Q9IV48 306 LTELDGTPYHAFES-PAPLGFPDIGACDWHVFNF-QS--GS--NSF--EGSHVQVRYKAKCPICTXLGSIEFTSD--Qdp 375 Human calicivirus HU/...
7EQS_A  88 LTELDGSAYHAFES-PAPIGFPDIGDCDWHMSAT-AT--NN--FTG--SSNEYQILIKQESAFAPHLGHVQADNL--Sag 157 Desert Shield virus
8J5B_A  78 LTELDGSPFMAFAA-PAPAGFPDLGSCDWHIEMS-KI--PN--SSTqnNPIVTNSVKPNSQQFVPHLSSITLDENvsSg- 150 Norovirus Hu/GI.4/S50...
8V97_A 378 ----DFQLQQPTKFTPVGIKIESGHeFDQWALPRYSGHLTLNMNLAPPIAPNFPGEQLLFFRSNVPCA-GG-VSDGVIDC 451 Norovirus GII
Q91I85 376 --ggDYIGTIQWTSPPSDSGGA--N-TNFWKIPDYGSSLAEASQLAPAVYPPGFNEVIVYFMASIPGPnQS-GSPNLVPC 449 Human calicivirus HU/...
Q9IV43 376 --agDTLGTIQWTSQPSNVTPVP-D-VNFWTIPQYGSSLAEASQLAPVVYPPGFGEAIVYFMSPIPGPnTA-HKPNLVPC 450 Human calicivirus HU/...
Q8JXJ0 375 --agDYVCTIQYTSPPSDPHNPNAD-VDFWSIPDYGSNLAEASQLAPVVYPPGFGEAIVYFMSRVPGWnRT-NRLNLVPC 450 Norwalk-like virus
Q8VA02 376 svntNMIAKLGWVSPVSDGHKG--D-VDPWVIPRYGSTLTEAAQLAPPIYPPGFGEAIVFFMSDFPIA-HG-TNGLSVPC 450 Human calicivirus NLV...
Q66418 376 a-ntDLIVSLSWISPVSDQHRH--D-VDPWVIPRYGSSLTEAAQLAPPIYPPGFGEAIVFFMSDFPVV-SG-VNGMRIPC 449 Desert Shield virus
Q6B7R2 374 --dgGQLGTLTWISSPSDDTPGHGT-INLWKIPSYGSTVTESVHLAPPIYPPGFGETLVNLMSNFPIGhTN-SNMAQVPC 449 Norovirus NLV/IF2036/...
Q9IV48 376 --agDQLGTLAWVSPSTSGA----R-VDPWKIPSYGSTVTESTHLAPLIFPPGFGEAIVYFMSDFPIV-SG--NTAQIPC 445 Human calicivirus HU/...
7EQS_A 158 a-ntDLIVSLSWISPVSDQHRH--D-VDPWVIPRYGSSLTEAAQLAPPIYPPGFGEAIVFFMSDFPVV-SG-VNGMRIPC 231 Desert Shield virus
8J5B_A 151 ---gDYIGTIQWTSPPSDSGG--AN-TNFWKIPDYGSSLAEASQLAPAVYPPGFNEVIVYFMASIPGP-NQsGSPNLVPC 223 Norovirus Hu/GI.4/S50...
8V97_A 452 LLPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRTGYITV--AHSGDYPLVVPSNGYFRFDSWVNQFYSLAP 529 Norovirus GII
Q91I85 450 LLPQEYITHFISEQAPIQGEAALLHYVDPDTNRNLGEFKLYPGGYLTCvpNSSSTGPQQLPLDGVFVFASWVSRFYQLKP 529 Human calicivirus HU/...
Q9IV43 451 LLPQEFVTHFVSEQAPSMGEAALVHYVDPDTNRNLGEFKLYPEGFITC--VPNGTGPQQLPLNGVFVFASWVSRFYQLKP 528 Human calicivirus HU/...
Q8JXJ0 451 LLPQEFIGHFVSEQAPAIGEAALLHYVDPDTNRNLGEFKLYPEGFITC--VPNGTGPQQLPLNGVFVFSSWVSRFYQLKP 528 Norwalk-like virus
Q8VA02 451 TIPQEFVTHFVNEQAPTRGEAALLHYLDPDTHRNLGEFKLYPDGFMTCvpNSSGTGPQTLPINGVFVFVSWVSRFYQLKP 530 Human calicivirus NLV...
Q66418 450 TLPQEYVAHFVNEQAPTRGEAALLHYVDPDTHRNLGEFKMYPEGFMTCvpNSSGSGPQTLPINGVFTFVSWVSRFYQLKP 529 Desert Shield virus
Q6B7R2 450 TLPQEFVAHFVNEQAPVRGDAALLHYVDPDTHRNLGEFKLYPEGYITCvpNTGGGGPQSLPTNGVFIFSSWVSRYYQLEP 529 Norovirus NLV/IF2036/...
Q9IV48 446 TLPQEFVSHFVEQQAPIRGEAALLHYVDPDTHRNLGEFKLYPDGFITCv-PNTGGGPQNLPTNGVFVFSSWVSRYYQLKP 524 Human calicivirus HU/...
7EQS_A 232 TLPQEYVAHFVNEQAPTRGEAALLHYVDPDTHRNLGEFKMYPEGFMTCvpNSSGSGPQTLPINGVFTFVSWVSRFYQLKP 311 Desert Shield virus
8J5B_A 224 LLPQEYITHFISEQAPIQGEAALLHYVDPDTNRNLGEFKLYPGGYLTCvpNSSSTGPQQLPLDGVFVFASWVSRFYQLKP 303 Norovirus Hu/GI.4/S50...
8V97_A 530 MGTGNGRRR 538 Norovirus GII
Q91I85 530 VGTAGPARG 538 Human calicivirus HU/NLV/Koblenz/433/2000/DE
Q9IV43 529 VGTASSARG 537 Human calicivirus HU/NLV/Musgrove/89/UK
Q8JXJ0 529 VGTASLARG 537 Norwalk-like virus
Q8VA02 531 VGTAGPARR 539 Human calicivirus NLV/Potsdam 196/2000/DE
Q66418 530 VGTAGPARR 538 Desert Shield virus
Q6B7R2 530 VGTAGPARR 538 Norovirus NLV/IF2036/2003/Iraq
Q9IV48 525 VGTAGPARR 533 Human calicivirus HU/NLV/Winchester/94/UK
7EQS_A 312 VGTAGPARR 320 Desert Shield virus
8J5B_A 304 VGTAGPARG 312 Norovirus Hu/GI.4/S50/2008/Lilla Edet/Sweden
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap