6SX1


Conserved Protein Domain Family
Rib

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pfam08428: Rib 
Rib/alpha-like repeat
The region featured in this family is found repeated in a number of bacterial surface proteins, such as Rib and alpha. These are expressed by group B streptococci, and Rib is thought to confer protective immunity.
Statistics
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PSSM-Id: 400640
View PSSM: pfam08428
Aligned: 88 rows
Threshold Bit Score: 49.1343
Threshold Setting Gi: 1086118866
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6SX1_A          4 DADKYTPEAKDITVTPGPtPDPAEGIGNKDT-------LP---SGT----KYEWkdP---VDTTTPGDKTGTIVVSYPDG 66  
WP_004826130  222 EADKFIPQTKALEVEKGNtvdIKTGLLNAPNdatvtikTD--------------------VDTSEVGEKTGVLTVKFNDA 281  Peptoniphilus...
SNU97556      827 DKDKYQPTTESIEKNYGE-KATPDEVKGKVT-------VPnfpANGkq-pTYTVd-EakiPNGLKSGTENVPVTVTYPDG 896  Staphylococcu...
KDA45731     1274 DADKYDPIYNSIEKPAGE-ATTEADVIGAVI-------VPdfpTDGeq-pKVTVddPsklPDGNTPGVFDIPVTVTYPDG 1344 Lactobacillus...
WP_004847040  774 DNEKYIPEFDQINKNYGE-ATTEEEIKGALK-------EEsvpENT----EVTVknPenlPDGMTEGTFEIEVTVEYPDG 841  [Ruminococcus...
EKB54063      848 DNEKYDPKVTPIEKEKGT-ATTEDEVKGAVT-------VPdypADAekqpEIKVddPtqlPDGKTIGEYDVDVTVTYPDG 919  Facklamia ign...
RYS76850      536 DADKYTPQTTSIIKEYGT-STTEEEIIGAVT-------VPgypEDTvdelEIALdnAtqiPDGNTAGDYPVDVTVTYPDG 607  [Ruminococcus...
WP_095103145 1339 DSDTYQPTTEPITKPYGQ-GTTEQEVKDKVT-------VPnfpKDGvq-pKVVIddPtkvPDGNTTGVFDVPVTVTYPDG 1409 Staphylococcu...
WP_052006341 1034 DADKYEPQVEPVEKPYGE-PTTADDVTSKVT-------VPdypTEGeq-pKVTVadPsklPDGKTPGEYDVPVTVTYPDG 1104 Lactobacillus...
WP_081479420  788 DAHTYEPKVTPITKDYGT-PTTEDDVKKAVT-------VPdypADKgt-pKVTIdeGaelPDGNTPGETNVPVTVTYPDG 858  Staphylococcu...
6SX1_A         67 STDEIQVTVKVTD 79  
WP_004826130  282 STKDVNITVSVKG 294  Peptoniphilus lacrimalis
SNU97556      897 SKEVVEVPVITKE 909  Staphylococcus piscifermentans
KDA45731     1345 STDNGTVKVTVLD 1357 Lactobacillus animalis
WP_004847040  842 TSEDTTVQVVVTD 854  [Ruminococcus] torques
EKB54063      920 SEDKVKVKVTVKD 932  Facklamia ignava CCUG 37419
RYS76850      608 SEDKVQVTVTVKE 620  [Ruminococcus] torques
WP_095103145 1410 TTDKVTVKVIVGK 1422 Staphylococcus piscifermentans
WP_052006341 1105 STDEVTVKVTVKE 1117 Lactobacillus animalis
WP_081479420  859 SKDHVNVPVTVKE 871  Staphylococcus pettenkoferi
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