6SX1


Conserved Protein Domain Family
Rib

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pfam08428: Rib (This model is not part of the current CDD release)
Rib domain
The region featured in this family is found repeated in a number of bacterial surface proteins, such as Rib and alpha. These are expressed by group B streptococci, and Rib is thought to confer protective immunity.
Statistics
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PSSM-Id: 518255
Aligned: 53 rows
Threshold Bit Score: 38.0027
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6SX1_A           4 DADKYTPEAKDITVTPGPt---PDPAEGIGNKDT-------LP---SGT----KYEWk--dP---VD-TTTPGDK-TGTI 59   Lactobacillu...
WP_003500435   990 DAEKYDPEVVPEIIYVGEs---ADLTDNVANLEDe------LP---EGT----IVTDlteyGedgVN-LDRPGKY-KGKI 1051 [Clostridium...
19_pfamImport    1 DADKYTPNVEDETVDFGGk---VDLTDNVTNLGD-------LP---SGT----TVTDvtktP---ID-TTQPGDY-TGTI 58  
WP_004826130   222 EADKFIPQTKALEVEKGNtv---dIKTGLLNAPNdatvtikTD----------------------VD-TSEVGEK-TGVL 274  Peptoniphilu...
9_pfamImport     1 QADDTTPTTDTLTKVEGD----PISADEITGKVIdi---------pADA----IVTVd--nPtdlPNvTSTVGDK-TVPV 60  
21_pfamImport    1 DNEKYDPKVTPIEKEKGT----ATTEDEVKGAVT-------VPdypADAekqpEIKVd--dPtqlPD-GKTIGEY-DVDV 65  
22_pfamImport    1 DNEKYIPEFDQINKNYGE----ATTEEEIKGALK-------EEsvpENT----EVTVk--nPenlPD-GMTEGTF-EIEV 61  
WP_253861303   395 DADKYIYSPKTIIANVGEtiglQKIRDALEK----------LP---EDV----QINIkn-----nAD-TSSEGKT-KIVV 450  Parvimonas m...
WP_089746041   216 DADKYTPTATKIEVIVGEkitpDMIKEHIT-----------IPa---------DAPIkevkYgttPP-TDIAGDKaPIKV 274  Granulicatel...
WP_022003237   687 DADKYTPQTTSIIKEYGT----STTEEEIIGAVT-------VPgypEDTvdelEIALd--nAtqiPD-GNTAGDY-PVDV 751  [Ruminococcu...
6SX1_A          60 VVSYPDGSTDEIQVTVKVTD 79   Lactobacillus acidophilus NCFM
WP_003500435  1052 EIEYPDGSTKELTVPIRVLK 1071 [Clostridium] symbiosum
19_pfamImport   59 EVTYPDGSKETIDVPVHVVD 78  
WP_004826130   275 TVKFNDASTKDVNITVSVKG 294  Peptoniphilus lacrimalis
9_pfamImport    61 TVTYTDGTTDHVNVPVKVTP 80  
21_pfamImport   66 TVTYPDGSEDKVKVKVTVKD 85  
22_pfamImport   62 TVEYPDGTSEDTTVQVVVTD 81  
WP_253861303   451 ELVFKDNSKKIVEIPVLVNS 470  Parvimonas micra
WP_089746041   275 TIIYQDGSTDIVEVPVHVTE 294  Granulicatella balaenopterae
WP_022003237   752 TVTYPDGSEDKVQVTVTVKE 771  [Ruminococcus] torques
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