5EXR,8G99


Conserved Protein Domain Family
Pol_alpha_B_N

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pfam08418: Pol_alpha_B_N (This model is not part of the current CDD release)
DNA polymerase alpha subunit B N-terminal
This is the eukaryotic DNA polymerase alpha subunit B N-terminal domain which is involved in complex formation. This domain docks on the SV40 helicase and activates the viral primosome.
Statistics
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PSSM-Id: 518250
Aligned: 79 rows
Threshold Bit Score: 65.9767
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5EXR_D         5 QQLAEELQIFGLDC---E-E----ALIEKLVELCVQYGQNEEGMVGEL-----IAFCTST-H--KVGL--TSEILNSFEH 66  human
XP_018015369   6 EEIIEEFETFGIDV---QsD----SILSRCLDLCSRYDLAADQLAASW-----LGFAATK-S--LDDM--SLELLSDFER 68 
XP_043675460   5 ENLQKYFQEFGCVV---EdN----GVLDKCIELCNLYNVDEEKLVEMW-----LGYSTSVfN--EVDI--TLDRLIKLEH 68 
XP_033344969   5 ESLILCFSNLGCDIs--D-K----SVIDKCIQLCHDYNIDEEKFVELW-----VAYTI-P-H--SLDIdpTINNLIKFEK 68 
GAV05324       8 DAIKDEFGMFGIKF---QsE----DVGDQMRMLCIKYQLDAPSIVSEWlvyskMAVSKSK-K--ETVL--DLKQLAHFDT 75 
VDD92327      14 EWISEQLVDFGYSFdetD-E----EFVSKMNLLSQTYILTADDLISDV-----IAFATNA-K--RSCL--DLLFLELYEK 78 
VDO23325      18 EQLADFMYTFEDDP---D-G----VFVAKANDLSKQYCKNGEDFISEL-----IAFATNQ-K--ETHV--NLSILDNFEQ 79 
KHN82668      14 EWFGDELSNFMFTF---D-NdpggAFISRVNHISNVYNKTGEDLVSEL-----IAFAANQ-K--RTHM--DIAFVDLYEQ 79 
RWS17792      15 EDIVHAMDAFGIVP---S-E----QLVARVKDLCLIYEYDADTLVSMW-----VFFAQQK-KyaTDSM--DFTRIEHFER 78 
RUS86560       6 EDISDELDVFGEDV---D-D----SQLQRLQDICQSYSINANELVMQW-----MAFS-SS-R--KVDL--NLDNIEVFER 66 
5EXR_D        67 EFLSK 71  human
XP_018015369  69 EQLSK 73 
XP_043675460  69 ELLKK 73 
XP_033344969  69 EDLEK 73 
GAV05324      76 AHLDR 80 
VDD92327      79 SVLAK 83 
VDO23325      80 LILQR 84 
KHN82668      80 TVLVK 84 
RWS17792      79 EVLHR 83 
RUS86560      67 EWLPK 71 
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