5N2H


Conserved Protein Domain Family
DNA_pol_B_3

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pfam08408: DNA_pol_B_3 
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DNA polymerase family B viral insert
This viral domain is found between the exonuclease domain of the DNA polymerase family B (pfam03104) and the pfam00136 domain, connecting the two.
Statistics
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PSSM-Id: 369858
View PSSM: pfam08408
Aligned: 11 rows
Threshold Bit Score: 144.413
Threshold Setting Gi: 82063078
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5N2H_A  354 SKNAFSCMGKVLNRGVRe-MTFIGDDTTDAKGKAAAFAKVLTTGNYVTVDE-DIiCKVIRKDI---------------W- 415 
Q9EMZ8  426 TKERFNIFCKISYNNNE--YIIEPLNTKANKNKISIFYDVIRTANYCFINN-NP-YKIKNKTEiiddieklydltsikNs 501  Amsacta moorei ento...
Q8V3Q8  350 SKNVFHCTVKYHTIVNEl-CEFICNDNIDNKDTIKIFSEVLLTGNYITIQD-DI-LRIVDKKI---------------T- 410  Swinepox virus
Q6TVU5  355 SKNAFHCTAVVEDARPDa-VRFRGDRSTDADGNAAVFARVLSTGNYVTVDE-RV-CRVLHKRV---------------D- 415  Orf virus
Q070J2  336 SKNAFRCHALVEAATPDgaATF---REREAGDVARVFREVLTTANYVTVGS-RV-HRIAAKSE---------------Tg 395  Crocodilepox virus
Q98207  345 SKNVFHCRARVLDAGAGe-CTLAGGPDANAEDRLRLFCEVLQTGNYVTLDTvHV-CRILGKRF---------------F- 406  Molluscum contagios...
P33793  350 SKNAFSCMGKVLNRGVRe-MTFIGDDTTDAKGKAAVFAKVLTTGNYVTVDD-II-CKVIHKDI---------------W- 410  Variola virus human...
P21402  334 SKNIFNCNVAIKEIDDTi-LTLEATVKDNSKDKLSIFSRVLETGNYITIGDnNV-SKIVYKDI---------------N- 395  Fowlpox virus strai...
Q9Q8R2  350 SKNVFNCDCVLTEIQNDt-MTFVGDHTTDAKATVNVFSQVLSTGNYINIGD-DI-FKVFNKTI---------------T- 410  Myxoma virus
Q6TUX3  350 SKNVFSCNTKLITVENSh-CTFVGNSLTDVKGKSLLFSKVLSTGNYITIND-DV-YKILKKVF---------------N- 410  Yaba monkey tumor v...
Q08FV4  349 SKNVFNCVTELIETDNNv-CTFIGNSTTDTKGKSEIFSEVLSTGNYITIGD-DI-YKILEKKI---------------Ny 410  Deerpox virus W-848-83
5N2H_A  416 -ENGFKVVll----cPTLPNDTY-KLSFGKDDVDLAQ--MYKDYNLNIALDMARYCIHDACLCQYLWEYYGVE 480 
Q9EMZ8  502 hNKKFTIYe-----nDIPINDNYaTVMLSKDDVDIGDknAYVNFTKEKSDNIAYYCTHDTVLCNCIFKYDMIH 569  Amsacta moorei entomopoxvirus
Q8V3Q8  411 -DSGFKIYvhd-kknIFILGNTY-TVSFGKDDVNLSD--MYKSYNIDTAIDMANYCIHDACLCKYLWNYYGIE 478  Swinepox virus
Q6TVU5  416 -EGGFTVDlad--saARAPGDRV-TLAFGKDDVSLAD--MYANYSLDVCLDMARYCLHDACLCLYLWSHYGVE 482  Orf virus
Q070J2  396 -EAGFRVTvapapgaEYAVGSTH-LLAFGKDDIDLQR--LYGDYRLATAETIAAYCLHDASLCKYIWHYYSVD 464  Crocodilepox virus
Q98207  407 -EHGFALRvrc--aeSYAPGSLC-ELAFGKDDVDLRE--LYRHYSLAAALEMERYCMHDACLCKYLWSYYRVP 473  Molluscum contagiosum viru...
P33793  411 -ENGFKVVls----cPTLTNDTY-KLSFGKDDVDLAQ--MYKDYNLNIALDMARYCIHDACLCQYLWEYYGVE 475  Variola virus human/India/...
P21402  396 -QDSFIIKvis--nrDYEIGSVH-NISFGKDDVDLKD--MYKNYNLEIALDMERYCIHDACLCKYIWDYYRVP 462  Fowlpox virus strain NVSL
Q9Q8R2  411 -KDSFTLTvka--npSYTVHNTY-TLSFGKDDVNLSD--MYKNYNLDVAVEMGNYCLHDACLCKYLWNYYGIE 477  Myxoma virus
Q6TUX3  411 -CDEFYVTvkc--nkTLEIGNFY-RLSFGKDDVNLSE--MYSNYDLQTSLEMGKYCIHDACLCKYLWDYYGVE 477  Yaba monkey tumor virus
Q08FV4  411 eSESFELKild-knnSFTKGEKY-ILSFGKDDVDLSE--MYKNYNLDIAIEMGNYCMHDACLCKYLWNYYGIE 479  Deerpox virus W-848-83
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