Conserved Protein Domain Family
FBD

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pfam08387: FBD 
FBD
This region is found at the C-terminal of F-box domain containing proteins (pfam00646) from plants; its precise function is unknown, but it has been associated with nuclear processes. Proteins in this entry are involved in the ubiquitin-proteasome pathway. They function as components of SCF (SKP1-CUL1-F-box protein) E3 ubiquitin ligase complexes. They have a F-box domain at the N-terminal (pfam00646). AtMIF1 (also known as F-box protein AT3G62230) from Arabidopsis, physically interacts with MYB domain protein 5 (MYB5), which results in MYB5 degradation representing a new regulatory pathway, 26S proteasome-AtMIF1-MYB5 that regulates oil content of seeds, increasing their oil content without affecting plant growth. This domain has a LRR-like fold.
Statistics
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PSSM-Id: 489576
Aligned: 228 rows
Threshold Bit Score: 36.1714
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
EFH38745     173 PSSVPECLLVSLKTVEW---ILY----KGTQEE--KDVVKYLLENGNFIKTMSI 217
ERN15740     275 tEGPFDCLNDHLETIHIslpRIYpldeASTRHFydTDFVKFLLVNSLVLKKMKI 328
XP_048232406 438 qIHTLKPFLSHLKVVKI---HGF----LECENE--VSLAKFLLKHGKCLQEMTL 482
Q9ZR09       420 qAYELESFLNHLEFVEI---HGF----VECENE--MSLAIFLLRHGKALIKMTL 464 thale cress
XP_010644815 359 pLQVPTCVELHLNEVEI---KKF----DGLDYE--LGAIEFLLKNARVLKKMSI 403
XP_003545870 375 sASVPQCFLSSLKVFQF---KEF----NVREHE--LLLAKFVLANAAVLEQMII 419
9_pfamImport   1 sATVPHCLTSTLQLVNF---GKL----HGLDHE--LSLAKFVMENGVVMERMSF 45 
KRH04884     371 PDNVPSCFMSNLQVVNF---GAL----NGKKHE--LRLAKFIMDNAKELQRVSF 415
2_pfamImport   1 qEPVSPCMIETLRIVEM---KGV----GGEPNE--LLLVKYLLRHGHVMETLNI 45 
XP_003543276 420 rKEPCECIDQQLKTLSI---MGF----AGKKTE--VEFLKYVITNGEVMKKITI 464 soybean
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