Conserved Protein Domain Family
Flexi_CP_N

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pfam08358: Flexi_CP_N (This model is not part of the current CDD release)
Carlavirus coat
This domain is found together with the viral coat protein domain (pfam00286) in coat/capsid proteins of Carlaviruses infecting plants.
Statistics
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PSSM-Id: 518211
Aligned: 25 rows
Threshold Bit Score: 68.7867
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q70DZ4        63 RLTQLAALLRXXXTSVHVTNMALEI-GRPIFQPPPNMGGVPSKyVQSRYQLIFL 115 Chrysanthemum virus B
A0AAR0        51 RFRKLKEYLLKNMRSKQIGNIGLEI-GRPALKPMDEIRPDLTN-IFTMPTIDIL 102 Narcissus symptomless virus
Q02106        74 RFNLLKEWHLNQQVNNKVKNPAMESeTEPAL--ADELKPDMSN-LFARPTVTDL 124 Poplar mosaic virus (ATCC PV257)
Q6UC80       108 RLEALKEWYRANMRPADVVNPLMQS-GLKQMEVTDKLKEDSTN-LYSRPALNTL 159 Melon yellowing-associated virus
O70731        72 RFNKLKKFQADNMTAGEIKNGGFET-GRPKLNIAANLRGDTAN-VFTRPSMDAL 123 Garlic common latent virus
O92527        59 RFQKLKEFNSQNLTAGELKNGGFES-GRPPAKISEHLRGSTAN-VFTRPSLDAL 110 Carnation latent virus
YP_001430025  68 RFHNLVKFETSNLNAGTLKNGGFEK-GRPKAVLSDALKGDTSD-VFTRPSLDAL 119
Q913Z5        49 RFQALQDLTAKSIAGSSIVNGGWEA-DRKRLKVSDKMKLDGSN-IFTRPTLDDL 100 Alfalfa latent virus
Q4F974        48 RMARLREFLMKQQRAVQVTNPSFEL-GRPKLKMLDSVRSDPTN-LYNKPTIDQL 99  Hippeastrum latent virus
1_pfamImport   1 RLDDLRAFLRKTQSASEITNPGFEL-GRPALKESTFNSDKHTH-IYGKWSIDQL 52 
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