8VES


Conserved Protein Domain Family
YicC-like_C

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pfam08340: YicC-like_C (This model is not part of the current CDD release)
Endoribonuclease YicC-like, C-terminal
This domain is found at the C-terminal end of Endoribonuclease YicC from Escherichia coli and similar bacterial sequences. YicC, which is important for cells in the stationary phase, and essential for growth at high temperatures, contributes to degradation of the small RNA (sRNA) RhyB via collaboration with the exoribonuclease PNPase and seems to generate a 3'-OH and a 5'-phosphate group.
Statistics
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PSSM-Id: 518196
Aligned: 314 rows
Threshold Bit Score: 105.158
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
8VES_A        172 VRSHMPEILQWQRERLVAKLEDa---Q--VQLENNRLEQELVLLAQRIDVAEELDRLEAHVKETYN-IL-KKKE-AvGRR 243 Escherichia coli
jgi:Tlie_1126 184 IARTWDFVKEKALADFRERIETil-aQqgVEADESRIIQEIVILSDKWDISEELDRLDSHMKKLRE-LL-YEKAfVsGKK 260
WP_006300841  174 IDETWASSRDQAYEATKGRIREll-dAagVAPDEHRWMQELAYLADRWDVSEELARIRSHLSQFRK-LG-QEAE-GsGRK 249 Aminomonas pau...
WP_012869531  170 ISRVWGDRMEMAFRQARERVEEml-aGlgASLDESRWAQELVIMADRWDVSEELSRLGSHVEQFLA-VR-DLKG-PvGKR 245 Thermanaerovib...
11_pfamImport   1 LSSRWNEISGQAFDGYRQKIKEtl-eRwdAPVDENRLVQELVILADKWDISEELSRSRSHIDQFRN-LL-KGEG-PiGRK 76 
WP_013048473  173 ILQQWEKARDSAVEETRERIKKif-eDngPAVEESRIAQEIALIADKWDISEELARAQSHIEKFQT-VL-NSPS-SeGRK 248 Aminobacterium
WP_014806815  174 IEKEWNEAFDEELENFRRKIDLll-sGnaQDSGDTTYLQGVAVMADKWDIKEEITRSKSHIAKFRE-TL-NSPS-SeGKK 249 Acetomicrobium...
WP_012546368  164 LENMVDVSYNTYINSLKNRVKEiiaeN---NLDEKRVLEQIILYAQKIDIKEEVDRLRSHITQFREnIL--EGGm-vGKK 237 Thermodesulfov...
WP_015010282  173 LTNQREIAKDQHYQRMVDRLNEllt--knnLTQDDRFYHELAILAEKGDISEEITRIHSHLKQIEL-LLdQQGEi--GRK 247 Amphibacillus ...
WP_013780605  174 IKSKADGVVDAYKDKLTARIQEmi-dD--TLLDMDRLMLEIAIYADKSDISEEITRLYSHIDQFSR-AI-NDDI-PvGRK 247 Mahella austra...
8VES_A        244 LDFMMQEFNRESNTLASKSINAEVTNSAIELKVLIEQMREQIQNIE 289 Escherichia coli
jgi:Tlie_1126 261 IDFLLQEINREINTIGSKASDSDIRWEIVEAKASIESMREQIQNVE 306
WP_006300841  250 LDFLVQELNRETNTLDSKVADAAIRALAVEAKAALERVREQIQNLE 295 Aminomonas paucivorans
WP_012869531  246 LDFIVQEMNREVNTLGSKVNDPEIRSLVVDAKSALEAVREQIQNLE 291 Thermanaerovibrio acidaminovorans
11_pfamImport  77 MDFLLQEMNREINTVGSKAASTELRWLVVDGKTLLERIREQVQNVE 122
WP_013048473  249 MDFLIQEMNREVNTVASKVTNAEIRWLAVEAKTALERIREQVQNVE 294 Aminobacterium
WP_014806815  250 LNFLLQEMLREINTIASKVGNAEIRWHVVEGKCLLEQIREQIQNVE 295 Acetomicrobium flavidum
WP_012546368  238 LDFLLQEINREINTVMAKTEDFQVKTLAIDIKTQTERLKEQIQNIQ 283 Thermodesulfovibrio yellowstonii
WP_015010282  248 MDFITQELIRESNTIGSKANDPLISEYIVELKATVEKIKEQVQNIE 293 Amphibacillus xylanus
WP_013780605  248 LDFITQEIYREFNTIASKATDVDIINSVIEAKAITEKIREQIQNIE 293 Mahella australiensis
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