2VMG,7JRM,7JS4,2VNG


Conserved Protein Domain Family
NPCBM

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pfam08305: NPCBM (This model is not part of the current CDD release)
NPCBM/NEW2 domain
This novel putative carbohydrate binding module (NPCBM) domain is found at the N-terminus of glycosyl hydrolase family 98 proteins. This domain has also been called the NEW2 domain. NPCBM domains found in bacterial conflict systems are predicted to interact with invasive molecules and recruit downstream effectors.
Statistics
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PSSM-Id: 518172
Aligned: 95 rows
Threshold Bit Score: 92.232
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2VMG_A          13 TSVYLSELEW--KSASTG---YG--EIQKDASCDGn---tITLKGengekV-----SYDKGIGTHAHSE-----IVYSLE 72   Clostridium ...
8_pfamImport     1 DYDYLSDFDW--TSVETQ---WG--TPRKNSNIQG---------M-----VhnnvkKFKKGVGIHANGK-----ITYDLS 54  
CDC61864       207 KYTYASDMYWkdSIS------LTnnQIMRDANTANewifdSTMR------------IFEKGLGMHASSDgytsyVEIDIT 268 
WP_011758279   970 TQLFLAEMTPqkLDKSAGs------RVALNSAIGGk---pMSMNG-----L-----KFSKGLGMAANGR-----VDYRLE 1025 Shewanella a...
11_pfamImport    1 DELYVSDMDW-----TVDqggYF--ENTRDACGCGn---pMAVY------VegtkqSFDKGVAMHAPAE-----LGVNLE 59  
jgi:Psta_3476  485 sSCWVSDTAW--KSAQVG---WG--RPRANRLPSDsm--aMVVGG-----Q-----LFARGLYAHAPSK-----YTYELG 540 
Q7UJN6         503 KSIWLSTIRP--QSSEVG---WL--RATYNSVPDKnr--lLSLGG-----D-----YFAHGIYAHAPAK-----HVYELD 558  Pirellula sp.
WP_013629020   467 TQVLLSQCLP--EQEQVG---WM--RPVYDRLPGAep--mLAAGD-----R-----LFETGLYAHAPAS-----HVYRLD 522  Rubinisphaer...
jgi:Plim_2846  489 KESSLTSYRA--DSAKVG---WM--QPAFNRLPNAsi--lLECRG-----E-----IFAKGIYAHAPAE-----HVYSLG 544 
WP_013991732   512 kfpfLSGLESisESAHNG--------VKRDKNYIGe---nIVING-----K-----AFQKGLMVCPVGKtseghIEFNIS 570  Zobellia gal...
2VMG_A          73 GldY--YDYFETFVGVDQEMa---GTVAS-ISFEVYL-DN---EKVFDSGLMTGDTTQKHVKVPI-AGKNTLKLVVKDgg 141  Clostridium ...
8_pfamImport    55 D--Kd-YDKFEALIGVDTAVg---ENNNSsVTFKIVG-DG---KTLATTKVMNYYDNLAYINVPV-KGIKELVIEVHDgg 123 
CDC61864       269 G--Mg-FKKFASYYGVCSTTsafdISMAS-VKFAVYG-DG---TLLFESDVMKYNDPFAYMECDI-SGVSALKIAVAGap 339 
WP_011758279  1026 G--N--WQLLRADLGIDDSC----KTKGG-LHFKIFG-DG---KLMYDSGLIEAPA-VVKPELDI-RGVEILSLQTEGta 1090 Shewanella a...
11_pfamImport   60 G--Kg-VSRFTARIGISADQt--lGNKAD-VNYVIKG-DG---KELYRKDHVISNGQSYLVDIDV-SKVKDLRLIVEE-- 126 
jgi:Psta_3476  541 G--K--WKRLSGVAGLAD------GNDGS-VVFVIVG-DG---KELWRSKKVADAS-LPAFDVDI-AGVQELLLQVEDag 603 
Q7UJN6         559 G--N--WKRLRGRSGIQG------NLFGQ-VDFEIIG-DG---KSLWKATRVTAGQ-GNAFDIDV-SKVQTLTLKVTDgg 621  Pirellula sp.
WP_013629020   523 G--R--WKKLEGFAGIAA------GKNGS-VQFEFKV-DG---KTRWKSRILRGGE-LIAFEVDL-TGGKQLELLTHPtd 585  Rubinisphaer...
jgi:Plim_2846  545 K--K--WKQLAGKVGLAT------GSGGS-VIFEIRG-DG---KTLWKSPIVKADQ-LVSFQVDV-SDVNQLQLVTSPse 607 
WP_013991732   571 Q--YqdVKGITATIGIDDMV----NHNGS-VVFIVRTyQNglwTDLYTSETLTGNDDGVDIDIDFpHPTSKVRLITTDgg 643  Zobellia gal...
2VMG_A         142 -dSIG--SDHGSFGDAKLT 157  Clostridium perfringens
8_pfamImport   124 -nGNA--CDHCIIVNPKLT 139 
CDC61864       340 siSGAw----GTWGGAVLI 354 
WP_011758279  1091 -kGVC-----GNWANASvv 1103 Shewanella amazonensis
11_pfamImport  127 --GDAdyNDHALWADAKFT 143 
jgi:Psta_3476  604 -nGNS--SDWGVWADPQLT 619 
Q7UJN6         622 -nGRG--GDWGIWVEPMLT 637  Pirellula sp.
WP_013629020   586 -dGAN--SDWGLWLKPTLS 601  Rubinisphaera brasiliensis
jgi:Plim_2846  608 -dGTY--QDWGLWLDPVLS 623 
WP_013991732   644 -dNAN--SDHAVWGNIQFk 659  Zobellia galactanivorans
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