2VNG


Conserved Protein Domain Family
NPCBM

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pfam08305: NPCBM (489512 is an unknown moldel)
NPCBM/NEW2 domain
This novel putative carbohydrate binding module (NPCBM) domain is found at the N-terminus of glycosyl hydrolase family 98 proteins. This domain has also been called the NEW2 domain (Naumoff DG. Phylogenetic analysis of alpha-galactosidases of the GH27 family. Molecular Biology (Engl Transl). (2004)38:388-399.)
Statistics
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PSSM-Id: 489512
Aligned: 91 rows
Threshold Bit Score: 91.0928
Created: 21-Aug-2024
Updated: 4-Dec-2024
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2VNG_A           9 RDVYLSDLDW--LNATHGddtKSk-IVQKNHPFtpgnnnqsTK-----ISLKMEdgsisEFEKGLGTIAGSPs---tITY 77   Clostridium ...
10_pfamImport    1 DYDYLSDFDW--TSVETQ---WG--TPRKNSNI--------QG---------MVhnnvkKFKKGVGIHANGK-----ITY 51  
CDC61864       207 KYTYASDMYWkdSIS------LTnnQIMRDANT--------ANewifdSTMR-------IFEKGLGMHASSDgytsyVEI 265 
WP_013408086   586 tdQYLSN-NW--TSATSG---YL--TVQLGKNV--------GGy---dISIGGVnysntNPGTGIGTHANSE-----VIY 641  Leadbetterel...
WP_011758279   970 TQLFLAEMTPqkLDKSAGs------RVALNSAI--------GGk---pMSMNGL-----KFSKGLGMAANGR-----VDY 1022 Shewanella a...
13_pfamImport    1 DELYVSDMDW-----TVDqggYF--ENTRDACG--------CGn---pMAVY-VegtkqSFDKGVAMHAPAE-----LGV 56  
jgi:Psta_3476  485 sSCWVSDTAW--KSAQVG---WG--RPRANRLP--------SDsm--aMVVGGQ-----LFARGLYAHAPSK-----YTY 537 
Q7UJN6         503 KSIWLSTIRP--QSSEVG---WL--RATYNSVP--------DKnr--lLSLGGD-----YFAHGIYAHAPAK-----HVY 555  Pirellula sp.
WP_013629020   467 TQVLLSQCLP--EQEQVG---WM--RPVYDRLP--------GAep--mLAAGDR-----LFETGLYAHAPAS-----HVY 519  Rubinisphaer...
WP_013111099   489 KESSLTSYRA--DSAKVG---WM--QPAFNRLP--------NAsi--lLECRGE-----IFAKGIYAHAPAE-----HVY 541  Planctopirus...
2VNG_A          78 DI-SGAgVTKFFSYLGIDRSAnpinEQYAKvDKIEVVVDG---KVIYSTinqfpNGLTYET----PAIKVDLNIpENAKR 149  Clostridium ...
10_pfamImport   52 DL-SDKdYDKFEALIGVDTAVg---ENNNSsVTFKIVGDG---KTLATT-----KVMNYYD----NLAYINVPV-KGIKE 114 
CDC61864       266 DI-TGMgFKKFASYYGVCSTTsafdISMAS-VKFAVYGDG---TLLFES-----DVMKYND----PFAYMECDI-SGVSA 330 
WP_013408086   642 NLgSHN-YNYFKAVIGKEDGSmg--cgDGR-LIFKVY-DNinnNLLFTS-----TTIGDPSfgfpSHQSITVDI-TGVTS 710  Leadbetterel...
WP_011758279  1023 RL-EGN-WQLLRADLGIDDSC----KTKGG-LHFKIFGDG---KLMYDS-----GLIEAPA-----VVKPELDI-RGVEI 1081 Shewanella a...
13_pfamImport   57 NL-EGKgVSRFTARIGISADQt--lGNKAD-VNYVIKGDG---KELYRK-----DHVISNG----QSYLVDIDV-SKVKD 119 
jgi:Psta_3476  538 EL-GGK-WKRLSGVAGLAD------GNDGS-VVFVIVGDG---KELWRS-----KKVADAS-----LPAFDVDI-AGVQE 594 
Q7UJN6         556 EL-DGN-WKRLRGRSGIQG------NLFGQ-VDFEIIGDG---KSLWKA-----TRVTAGQ-----GNAFDIDV-SKVQT 612  Pirellula sp.
WP_013629020   520 RL-DGR-WKKLEGFAGIAA------GKNGS-VQFEFKVDG---KTRWKS-----RILRGGE-----LIAFEVDL-TGGKQ 576  Rubinisphaer...
WP_013111099   542 SL-GKK-WKQLAGKVGLAT------GSGGS-VIFEIRGDG---KTLWKS-----PIVKADQ-----LVSFQVDV-SDVNQ 598  Planctopirus...
2VNG_A         150 LQLKSYA----GEKtwGDEVVYADAKFT 173  Clostridium perfringens
10_pfamImport  115 LVIEVHDgg-nGNA--CDHCIIVNPKLT 139 
CDC61864       331 LKIAVAGapsiSGAw----GTWGGAVLI 354 
WP_013408086   711 LKLVVENgdgpSTG--CLWGTWAIARLS 736  Leadbetterella byssophila
WP_011758279  1082 LSLQTEGta-kGVC-----GNWANASvv 1103 Shewanella amazonensis
13_pfamImport  120 LRLIVEE----GDAdyNDHALWADAKFT 143 
jgi:Psta_3476  595 LLLQVEDag-nGNS--SDWGVWADPQLT 619 
Q7UJN6         613 LTLKVTDgg-nGRG--GDWGIWVEPMLT 637  Pirellula sp.
WP_013629020   577 LELLTHPtd-dGAN--SDWGLWLKPTLS 601  Rubinisphaera brasiliensis
WP_013111099   599 LQLVTSPse-dGTY--QDWGLWLDPVLS 623  Planctopirus limnophila
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