1YUA


Conserved Protein Domain Family
Zn_Ribbon_Topo
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pfam08272: Zn_Ribbon_Topo (This model is not part of the current CDD release)
Topoisomerase I zinc-ribbon-like
Some Proteobacteria topoisomerase I contain two zinc-ribbon-like domains at the C-terminus that structurally homologous to pfam01396. However, this domain no longer bind zinc. Indeed, only one of the four cysteine residues remains.
Links
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Statistics
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PSSM-Id: 518152
Aligned: 41 rows
Threshold Bit Score: 42.2775
Created: 15-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
1YUA_A        14 PLPELPCEK-SDAYFVLRDGAAGVFLAANTFPKSRE 48  Escherichia coli
Q6FET8       774 KMEHLRSVK-HDDYFVLRDGAAGLFLAASKFPKIRE 808 Acinetobacter baylyi
CBL44868     774 pMQHLRCQK-HDDFYLLRDGASGLFLAASQFPRHRE 808
Q0VQT8       776 PMPHLQCQK-VDDHYLLRDGASGLFLAASKFPKNRE 810 Alcanivorax borkumensis SK2
WP_011912884 758 KMPELKCEK-VDDTYVLRDGASGLFLAASQFPKNRE 792 Stutzerimonas
P57371       753 PFPELLCKQ-SDAWFVLREGISGIFFAANTFPKSRE 787 Buchnera aphidicola str. APS (Acyrthosiphon pisum)
WP_013052041 766 HLPDVKCTK-SDGYFVLRDGAAGIFMAASTFPKSRE 800 Shewanella violacea
Q6LPB7       761 HLPEIPCTQdSNAYFVLRDGASGLFMAASTFPKSRE 796 Photobacterium profundum
WP_011770299 766 dLPELECEQ-SDAHFILRDGASGIFLAANTFPRSRE 800 Psychromonas ingrahamii
BAN96396     220 pLPELPCEK-SDAYFVLRDGAAGVFLAANTFPKSRE 254
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