5MQF


Conserved Protein Domain Family
SYF2

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pfam08231: SYF2 
SYF2 splicing factor
Proteins in this family are involved in cell cycle progression and pre-mRNA splicing.
Statistics
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PSSM-Id: 400506
View PSSM: pfam08231
Aligned: 96 rows
Threshold Bit Score: 77.2343
Threshold Setting Gi: 56465810
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5MQF_N        91 RGEDYEKVKLLEISAEDAE-RWERk--KKrKNPDLGFS-DYAAAQLRQYHRLTKQIKPDMETYERLREKHgEEFFPTS-- 164
EFN54389      57 lgLDPSKAYRLDTAETAEA-QFKKkekKP---APQGWEqFNQATLAAAYEKRTEKIKPDRSEYEEAKSTDpE-FYRTA-- 129 Chlorella varia...
XP_002985595 137 sGIDKSKMYMLDTQEAAEE-KYKKrdkNP---APFGWDvFNQKSLYNAYKKRAKTIPNTVEEYAKVRDNDpD-FYCNE-- 209 Selaginella moe...
XP_006363753 144 KGLDMSKAYMLDTQESAET-KYKKwekEP---APAGWDvFNKKTLYNAYKKRTKNVDVDVDEYNRMKETVpE-FYREA-- 216 potato
ERN00930      57 NGLDITKAYMLDTQEAAEV-KYKKwekEP---APFGWDvFNQKTLYNAYKKRTENIKCDMEEYEKLKECDpE-FYRNA-- 129 Amborella trich...
CAQ37985     453 tdDKEDAPAIYTTSAAQAK-GASKkinKK--------ElIEVDRDKRFFKKMKFNFSINRNLYDEKKKKMgKSFYGQDll 523 Plasmodium know...
EDL42927     434 GDDGEDPPAIYTTSAAQAK-GASKkknKK--------DlLEVDRDSRFFKKMKFNFSINRNLYEEKKKKLgESFYGGDll 504 malaria parasit...
Q8IAN0       531 NNNNNRRDKLYNTSAFHVK-KIMHkknKK------KDDtYELENDTNLYKKIKFNFSINRKIYDEKKKIHgSNFYNINll 603 Plasmodium falc...
Q4UCL3       401 qLISPNTSYPYIISAGMVE-KLSKiekTKeKNKTFGWNiFNQDALYRAHKKRLRETGFNPDLYEKQKNELgEEFYRPGiv 479 Theileria annulata
EDO07045     356 SSVNYNRNPGLNKAAIAVEkQHERdlkKE-KGKSFGWNvFNQDALYRAHKKRLKETAFNREEYELQKAQMgDLFYQPCls 434 Babesia bovis
5MQF_N       165 ---NS--LlhG--THVPSTEEIDRMVIDLEKQIEKRDKYSRRRPYN-DDADIDYINERNAKFNKKAERFYGKYTAEIKQN 236
EFN54389     130 ---DSllY--GsaGR-VSEAGIDRMVAELNER--QGKSFSRRRAFR-EDKDVDYINDRNAHFNKKIERAFGTHTAEIKAN 200 Chlorella varia...
XP_002985595 210 ---TSlqY--GktPA-VPEEFVDRMVQELEGRISKRKDFSRRRKYH-EEKDIDSINERNEHFNRKIERAFGKYTVEIKNN 282 Selaginella moe...
XP_006363753 217 ---SSlqY--GkaPK-LSDEKIERMVKELKDRDEKRQSFSRRRKFH-EEKDIDSINDRNEHFNKKIERAFGKYTLEIKNN 289 potato
ERN00930     130 ---TSlqY--GkaPK-TSEENIDKMVNELKEREEKRKAFSRRRRFH-EEKDIDSINDRNEHFNKKIERAFGKYTLEIKNN 202 Amborella trich...
CAQ37985     524 itdTS----------KCTERDKNNVISFCRKQEMVRSKLSRKRKED-NGVFKNYINKRNKMYNKKLDRYFNQHTAEIRQN 592 Plasmodium know...
EDL42927     505 atdSS----------KCTESDKNKVISFCRKQQVVRSKLSRKRQHE-DGLFKNYINRRNKMYNRKLDRYFNQHTAEIRQN 573 malaria parasit...
Q8IAN0       604 nheNT----------KANEYDKNKVVEFCKKQEELRSKMSRKRKEK-EGIFKNYINQRNKIYNKKLDRYFNKHTLEIRNK 672 Plasmodium falc...
Q4UCL3       480 -------------nfNPNEASKDVVVRNVEKQYKKRDAFSRRRLYDdEAQDISYINERNRVFNKKLERSFGTYSNEIKQN 546 Theileria annulata
EDO07045     435 -------------ttETTEAAKLAVVHNLEKQYKQREKFSRRRAFEdDAKDVSYINQRNRVFNQKLDRAFKDHSAEIKGN 501 Babesia bovis
5MQF_N       237 LE 238
EFN54389     201 LE 202 Chlorella variabilis
XP_002985595 283 LE 284 Selaginella moellendorffii
XP_006363753 290 LE 291 potato
ERN00930     203 LE 204 Amborella trichopoda
CAQ37985     593 LE 594 Plasmodium knowlesi strain H
EDL42927     574 LE 575 malaria parasite P. vivax
Q8IAN0       673 LE 674 Plasmodium falciparum 3D7
Q4UCL3       547 LE 548 Theileria annulata
EDO07045     502 LE 503 Babesia bovis
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