6P0Q


Conserved Protein Domain Family
NLE

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pfam08154: NLE 
NLE (NUC135) domain
This domain is located N terminal to WD40 repeats. It is found in the microtubule-associated yeast ribosome biogenesis protein YTM1.
Statistics
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PSSM-Id: 400462
View PSSM: pfam08154
Aligned: 190 rows
Threshold Bit Score: 38.6416
Threshold Setting Gi: 281209658
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6P0Q_A         4 LQTRFYTDNK-KYavdDVPFSIPAASEIADLSNIINKLLKdk--nEfhkhVE--FDFLIKgQF-LRMPLDKHM 70 
XP_001708349   2 IIAQLVTDtgdaL---AETLEIPEDTTGADLQEVLRTFRAtd-pdD----VPikYSFFIG-TTeVRGSLKQAI 65  Giardia lamblia ATCC 5...
XP_654575      4 IQIRLINGEL-FnsepSQVFEIPEETNTKELNALVNKLNKte-------eEPfpYSFYTD-----GIQITDNI 63  Entamoeba histolytica ...
A0C0D3        22 VFVTLFNPygeeA---QKSLELSVNTTKEELQQILQSLVKte--eD----QV--YTFFHN-NIeLVDTLNQLi 82  Paramecium tetraurelia
Q24FU3        31 IYIQFKNAegekV---DNILQVPLTTKAKELEAMINEILQndeekL--------YTFFYG-THeIKTSIDDFa 91  Tetrahymena thermophil...
XP_002991264   8 IICVFVNAdgkaL----ERLDVPQNLTPKELQTLINTVLHne--eP----LP--YAFYIN-DLeLVGQLGEHV 67  Selaginella moellendor...
EFH40455      11 VMCLLTDPegthL---GSAMYIPQNAGPLQLTQLVNRFLDne--eM----LP--YSFYVS-DEeLLVPVGTYL 71  Arabidopsis lyrata sub...
XP_002313318   9 VMCQFTDPegtpL---GAPLYLPQNAGPQQLQQIVNKLLNne--eK----LP--YAFYIS-DQeLVVPLETYL 69  black cottonwood
Q2R1T0        18 VMCQLVNPegdhL---GAALYLPQNVGPPQLQEIVNHLLHne--dK----LP--YAFYIG-DEeLSVQLGAYM 78  Japanese rice
ERN12504      23 lLCLLTDPegtpL---GLPLYLPQDAGPAQLQDLVNTLLHne--eK----FP--YAFYVS-DQqLSMQLGSYL 83  Amborella trichopoda
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