Conserved Protein Domain Family
CMV_US

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pfam08001: CMV_US 
CMV US
This is a family of unique short (US) cytoplasmic glycoproteins which are expressed in cytomegalovirus.
Statistics
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PSSM-Id: 285273
Aligned: 3 rows
Threshold Bit Score: 234.316
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
F5HDD3   1 MRI------QLLLVSTLVASIV-----ATRVEDMATFRTEKQwqqdlqyrrefvkrqLAP--K------PK----SNIVV 57  Human herpesvirus 5 s...
F5HC33   6 PSTcsffwhWCLIAVSVLSSRSkeslrLSWSSDESSASSSSR---------------ICPlsNsksvrlPQyprgFGDVS 70  Human herpesvirus 5 s...
F5HB52   1 MRR------WLRLLVGLGCCWVtlahaGNPYEDddyyyyrede-----prqhgepnyVAP--ParqfrfPP----LNNVS 63  Human herpesvirus 5 s...
F5HDD3  58 SHTVS-----CVIDGGNMTSVWRFEGQFnPHI--------------------ASEvilhdtsglynvpheVQNDGQVLTV 112 Human herpesvirus 5 s...
F5HC33  71 GYRVSssvseCYVQHGVLVAAWLVRGNF-SDTapraygtwgnersathfkvgAPQ---------------LENDGALRYE 134 Human herpesvirus 5 s...
F5HB52  64 SYQAS-----CVVKDGVLDAVWRVQGTFyPEKgivarvgwsgrrgrkwgrlhAPEclvetteavfrlrqwV--------- 129 Human herpesvirus 5 s...
F5HDD3 113 TVKRSAPADIAKVLISLKPVQ-LSSGQYECRPQLQLPWVPRPSsfmy--------dsyRLWYEKRWLTIILYVFMW-TYL 182 Human herpesvirus 5 s...
F5HC33 135 TELPQVDARLSYVMLTVYPCSaCNRSVLHCRPASRLPWLPLRVtps---------dleRLFAERRYLTFLYVVLVQfVKH 205 Human herpesvirus 5 s...
F5HB52 130 ------PTDLDHLTLHLVPCT-------KCKPM----WCQPRYhiryfsygnsvdnlrRLHYEYRHLELGVVIAIQ-MAM 191 Human herpesvirus 5 s...
F5HDD3 183 VTLLQYCIvr-fiGTRLFYFLQR--------NITIRFTGKptynlltyPVK 224 Human herpesvirus 5 strain Merlin
F5HC33 206 VALFSFGV-----QVACCVYLRWirpwvrgrHRATGRTSR--------EEE 243 Human herpesvirus 5 strain Merlin
F5HB52 192 VLLLGYVLartvyRVSSAYYLRW--------HACV-------------PQK 221 Human herpesvirus 5 strain Merlin
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