2I1S


Conserved Protein Domain Family
PRiA4_ORF3
?
pfam07929: PRiA4_ORF3 (This model is not part of the current CDD release)
Plasmid pRiA4b ORF-3-like protein
Members of this family are similar to the protein product of ORF-3 found on plasmid pRiA4 in the bacterium Agrobacterium rhizogenes. This plasmid is responsible for tumourigenesis at wound sites of plants infected by this bacterium, but the ORF-3 product does not seem to be involved in the pathogenetic process. Other proteins found in this family are annotated as being putative TnpR resolvases, but no further evidence was found to back this. Moreover, another member of this family is described as a probable lexA repressor and in fact carries a LexA DNA binding domain (pfam01726), but no references were found to expand on this.
Links
?
Statistics
?
PSSM-Id: 517972
Aligned: 84 rows
Threshold Bit Score: 88.4404
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
?
Program:
Drawing:
Aligned Rows:
Download Cn3D
PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection: 
2I1S_A         7 KVYHLKLSIKGI-TP-QIWRRIQVPENYTFLDLHKAIQ----AVMDW--EDYHLH------------------------- 53  Methanosarcina ...
WP_013688615   2 gaLKFRVLLDSE-KDqEIFRDIIINEDENFESFYRTIL----NSFNF--EGQEIG------------------------- 49  Fluviicola taff...
CDC60545     111 QVYTFHIAYEGF-ED-KIWRTVEVSGNNTLAQFGYLIL----ATFDL--LEYHAF------------------------- 157
CDB30793       5 PIYQFYAELKDY-EP-KIWRRFQVPENITMARLGYILM----TMYEM--KANHLFcvtvpirdnvkldetlsgvgsvfpd 76 
8_pfamImport   1 --FVFKIKIDGSaKP-PIWRKVKVNESMTFGDFHLVIQ----ILFGW--TDSHLF------------------------- 46 
WP_008506372   1 mAFQFKITLNHTaDP-KVWRTLLVPDDISLHIFHLCIQ----AAFGW--ENCHLY------------------------- 48  Mucilaginibacte...
CDC07812       2 KAYQLKIQIKNS-HP-PIWRRVVVPSGITFQYLSEILN----VTMGW--IGYHLH------------------------- 48 
7_pfamImport   1 KAFQIKIELIDS-EP-LIWRRVVIPADVTFRRLHDTIQ----FSMGW--RDYHLY------------------------- 47 
WP_011879311   2 KAYQIKIELQNS-DP-LIWRRVIMPAGATFNRLHDVIQnvfnFKSGYpyEPYHLF------------------------- 54  Desulforamulus ...
WP_011971376  41 KSYIIRIELEKS-NP-LIWRRVIMPAGATFNRLHDVIQnvtnFQSGYpsSGYHLF------------------------- 93  Alkaliphilus me...

2I1S_A        54 ---EFEM---------------VNPKTGMldki-------------gaeGDDFDAFGGPLVSEK---------KAKLSDY 93  Methanosarcina ...
WP_013688615  50 ---SFFMsnddwdkgh-------------------------eislmdmsYSDEDQELTSVMSES-----------KLTDF 90  Fluviicola taff...
CDC60545     158 ---EFTY-------------------------------------------QDISYVLPMILDEGdiedakdstQVKLCKM 191
CDB30793      77 kswRFEIg----------------------------------------nEELFPGEGEKVFDAS---------TYKMRSI 107
8_pfamImport  47 ---EFTP-----------------KGWGScpritfsfdeeyepdesfsePETFPYGELYRAD-----------EIRLNDY 95 
WP_008506372  49 ---QFCP-----------------KSWGSqps---------------ytVIDEFTDDMDAEDSD---------EVAVSEI 84  Mucilaginibacte...
CDC07812      49 ---SFEFfhsgisv-----------------------------emksdeLNFFDDIDNKSLDEQ---------ETVIDTF 87 
7_pfamImport  48 ---EFEFpqeklritndeesyeVFKFYSAkykskkp------trkedphGIIARIIETTVRQPQ---------TVKIDNY 109
WP_011879311  55 ---EFDLsadnirvindeeayqQHQYYKKnrkeieekmkntppefakfnQAHLENLSTVIRKPT---------GIKIDEY 122 Desulforamulus ...
WP_011971376  94 ---EFDLteenmlvtndeqaylEHQHYKKnkamyeerlktippemivfeKNYQERLKIEVRKPT---------GLKIDDS 161 Alkaliphilus me...

2I1S_A        94 -FtLENKEALYTYDFGDNWQVKVRLEKILPRkegVE--YPI-CTAGKRAAVPEDSGGVWGYEEMLEVL-KDSE---H--- 162 Methanosarcina ...
WP_013688615  91 -MeAPDQKIILVYDFLRMWIFLIELQERIEEtl----dKPKiALA-VGIAPPEDSKIV-----------QDDAffgD--- 150 Fluviicola taff...
CDC60545     192 -GlAVDEQFEMEYGYGCSQMFRIRLDAVSDMergRGshYPY-VIDGQGRGILEDVPAE----EFGAIV-AKTDaagKsdy 264
CDB30793     108 lQgCQGEKLTLEYDYGDGWEVEITLESVLEDkelPGreLPR-VLAGEGYGIIEDCGGTGGLEQLAAAFrQKSG------- 179
8_pfamImport  96 -FkKVKQKIVYIYDFGDDWRHIVELVDIADDav----lLPV-CLAGKGSHLEEDCGGIGGFYNMVEAV-NNPK---H--- 162
WP_008506372  85 -FkAPKQKFTYIYDFGDSWMHTIVLEKILDDev----lFPM-CTGGEGACPPEDCGGIGGYYRMVEIL-SNPK---H--- 151 Mucilaginibacte...
CDC07812      88 -L-EKENTFTYIYDLGDFWEHKVTVEKVLDD---YEysYAQ-VLKYKGETPYEDCGGIYGYYEIQDIL-SNPR---H--- 154
7_pfamImport 110 -L-EKYKTLEYIYDFGDYWRHKIELEKTIED---YEfgYPI-ILAGAGACPPEDVGGFGGYKEFLEAW-NDLK---H--- 176
WP_011879311 123 -I-EKYGEIKYIYNYGDDWRILVILEEIVED---YHygYPT-LIDGAETAPPEDVGGLPGYYQFLKVY-HNPN---H--- 189 Desulforamulus ...
WP_011971376 162 -L-EKYKEIRYNYDFGDDWHFTVKLEEIVDD---YYfgFPT-LLDGVETAPPEDVGGIHGFYEFLKAY-RDPK---H--- 228 Alkaliphilus me...

2I1S_A       163 --EEYEDTVLWLGd-----dFD 177 Methanosarcina mazei Go1
WP_013688615 151 --EEDEDMNEFDedf--gdgYD 168 Fluviicola taffensis
CDC60545     265 riERYGEne----------iWD 276
CDB30793     180 --DDYENYREWLGrd----eSD 195
8_pfamImport 163 --PEHNEYREWLGmkr-gekWD 181
WP_008506372 152 --AEYREMREWLGmlgskkkWD 171 Mucilaginibacter paludis
CDC07812     155 --PQYKQTKEWVEeqi-tqkYD 173
7_pfamImport 177 --PEHESMRQWGEsqh-yreFD 195
WP_011879311 190 --PEYEEVRAWAKeqy-freYD 208 Desulforamulus reducens
WP_011971376 229 --PEYEDIKTWAEsly-freYD 247 Alkaliphilus metalliredigens
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap