Conserved Protein Domain Family
Vps54

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pfam07928: Vps54 (This model is not part of the current CDD release)
Vps54-like protein
This family contains various proteins that are homologs of the yeast Vps54 protein, such as the rat homolog, the human homolog, and the mouse homolog. In yeast, Vps54 associates with Vps52 and Vps53 proteins to form a trimolecular complex that is involved in protein transport between Golgi, endosomal, and vacuolar compartments. All Vps54 homologs contain a coiled coil region (not found in the region featured in this family) and multiple dileucine motifs.
Statistics
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PSSM-Id: 517971
Aligned: 103 rows
Threshold Bit Score: 80.6387
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_004994290  830 EEHAAIGALLLFIKMLAEYCRCLDAM-PLAASDLLRKLFEILRSFNSQVRRLILQAEAMR-TLGLKR--ITAKHIALSAE 905 
XP_001322589  481 SKFGVTASALTMLEIIWNYLEAARRI-KGTADDFTIKLAAAISNYSRQCMYYIYEGAAAK-QGKFKN--TSTRHLSLASA 556 
A0BQ00       2109 SKYKVTQAFLFFLQAISQYLHLFESY-SVINYEQTQKLVELIKCYNSLATQYILGAGAVH-FGKIST--ITAKNLAISSI 2184 Paramecium te...
Q23QT8        773 QTYKLTSAFLQILKMIYEYLHLIDYF-KSMRETSSKKLIELLKFYNSYANELLIGGGAFQ--LGVQ---VSAVNLALSSV 846  Tetrahymena t...
XP_001013161  816 KKYMFSEGFLVFLKQVQKYIGIMAESkIQYSKEYFIRFISLLRQYNTFSREFIVLAKGKNpQFPQMNgkVTVKNLATSSL 895 
XP_004354100  689 EKFKIGNTTLMLLKFIDDYLNCIEKI-PMLAVDSIPKIAELLNTFNGITYQLVLGAGARQ-IMRTKT--ITSKHLGLTSQ 764 
XP_002175086  732 DTFSCVATSSKLLHVLVDYARFASQV-PRFSSDCYASVLELYRVVNSRVYQLIMGAGAVR-SAGLPR--VLGKHIALAAQ 807 
O14093        708 QSLHIVRSSVTLLETLDDYGKLLAHF-SRLAPEFQTGMLDMFRTLNSRVYQLILGAGTVR-SSGLSK--VLGKHIALASQ 783  Schizosacchar...
XP_013024065  701 QSIHMVNASVRLLETMNQYGQLVYHF-PRLSHYLYYGMIDLLRTLNSRVYQLILGAGTVR-SSGLSR--VLGKHIALASQ 776 
XP_652343     573 ETYFMTNTMSILLPTLERYREIIIKF-PLLGECALSSAKDMLILYNNSMRRLILGKELIQ-KGVVQR--IGATMFTTTHQ 648  Entamoeba his...
XP_004994290  906 AIAVILAVLPSIKQRSAKL------VRDRSKSMLSE-FNSVQDEYARHQHDLLSKLTVIMED 960 
XP_001322589  557 NIEFMARLISYITPRLETVg----aN----RNIVSVqMQNVSKNLIENENKLNTQICKVLTN 610 
A0BQ00       2185 CLRLFLYLLDPLSNKLFKVinqqqqTEFTNLQQIQNdFATIKVDYENHNAEVMAKLTTIVQD 2246 Paramecium tetraurelia
Q23QT8        847 CLQFALKIFPQMTERIIGLy----kEDRDLAENIEDqFSRLSDEYNNHNINIQKTISDILik 904  Tetrahymena thermophila SB210
XP_001013161  896 NLTFLIKIFDKIKERLVQN------TDVSKEIIDAE-FQKIKIDIQNHISEIFGTIPNIIKD 950 
XP_004354100  765 CLSFLVKLIPYLKTYLQRFl-----PSKNQYALLNN-FDKLTQDYTSHRSEIFSKFIDIVKE 820 
XP_002175086  808 MIRFLQSSLKIMVQFLETT---------GGINPGLE-VEKLNRDFSFHLQQVQNKFVALMRE 859 
O14093        784 TIALFQLSLNSMCRYLSRV---------TGTRLTNE-TNKLDQDFTVHHLQIHDKFVSLMRE 835  Schizosaccharomyces pombe 972h-
XP_013024065  777 TVTLFQALSTSMVKFLSKY---------SGIRQTQE-LLSLENDFDLHHDQITEKFIALMKE 828 
XP_652343     649 TLLLLSLITPYLHHYLSPN-----------VIISGRiLDGIEDLMKAQCTDIRNALTIIVRN 699  Entamoeba histolytica HM-1:IMSS
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