Conserved Protein Domain Family
Frigida

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pfam07899: Frigida (This model is not part of the current CDD release)
Frigida-like protein
This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana. This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time.
Statistics
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PSSM-Id: 517955
Aligned: 47 rows
Threshold Bit Score: 220.572
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
EFJ36709     155 AEVRVRPELKTLCENMDGEGLRRYVSEHRKDVSALRLELPVAIRCAIDPARLVLDALEGYSIPsdsesGGGGDRKESGVS 234
XP_006844773  91 KEELLQSSFEALCKQMDGKALRRFVTINLSQIDSIRKMAPGALMSAPDPAKLILDCMGGFYLQ-----HVNAFSKHSPLI 165
XP_052148406 117 GGDPSAEHMGRICERMGSGELLRFVISRMGDLSWLLHAVPPALRRAPNPAELVLRAIGRYYIRpggrhTEA--------- 187
7_pfamImport   1 SPPKEKSEAERFCESMWSKELRRYMFVNISERAKLIEEIPGALKLAKDPAKFVLDCIGKFYLQ-----GRKAFAKDLPAI 75 
XP_004252292  45 DSKSPDSQLETLCKTMCGKGLRSYILSKLPEKNTLREELTKALKLAPNAAKLVLSCMGDFFAK-----RGKAFDKDARMI 119
6_pfamImport   1 ELKSPRSELEIFCETMDHCGLRKYMTTHISNFRGLREEVRKALRLSPNPATLVFNCIGKFYIT-----AGKKFANESPLG 75 
XP_015169712 201 SSPRSSSEVKILCETMNSHGLRKYMIRRLSCLKTLQQKVPKALKLSPNPARLILEAIGMFYTQ-----GSNTYVEGSPLI 275
XP_002511054 130 AKSSSSSELISLCEMMCGRGLRKYLTSNLTNIPKLRNEVPTALKYAPKPAKLVFDCFGGFYLQ-----GSRAYTKDSPMV 204
XP_003522457 103 EEEEEEDELLTLCKTMNSRGLRKYVLTRLSETASLREQVPLALRSAPNPSRLVFECIGRFFLQ-----GSKAYTKDSPMI 177
P0DH90       137 pETSNKPEGGRMCELMCSKGLRKYIYANISDQAKLMEEIPSALKLAKEPAKFVLDCIGKFYLQ-----GRRAFTKESPMS 211 thale cress
EFJ36709     235 ANRRACVLILESAGSALAdpvlgvehpVVPFNIKERAKELAGRWKSRMDVLkdssgavasenSLDAQVFLQLLATYGIAS 314
XP_006844773 166 GIRRACILLLEFFVASSL---------EVSSVVQEEAKSVSIAWRERLIKEggva----katGMDALGLLLFVAAFGVPP 232
XP_052148406 188 ----ACELLLLSYVRAGCplrpg--qeagDDHLRAEAREAALSWRSRLVRSkgrv---aaaaANDARGLLLLMAAFGVPV 258
7_pfamImport  76 TARKVSLLILECYLLTFDpege-kkkkLLVSSVKDEAEAAAVAWKKRLVGEgwlg----aaeAMDARGLLLLVACFGIPE 150
XP_004252292 120 ATREASALVLECFLLIGFd--------VIDEGVKEEAAQAAVIWRRRFVDErgir----kasTMDARGLLLLIGCFGIPQ 187
6_pfamImport  76 RGRKAKVLLLECFLLMIGicd---kgvEIENWVKEEAEQTALAWLERMKSEggk------lqEIDARGLLFFIGGFGIPD 146
XP_015169712 276 TERRALVLLLECFLRMIGegegegssvEIENGEKEEAGQAALAWYRRLNFEggil----kaqEIDARGLLLFIGCFGIPQ 351
XP_002511054 205 PGRKASILVLELFLLILDdg------iQFDSDLRQEAQQAAAAWRKRLIAEggvs----kacEIDARGLLLFVGCFGIPK 274
XP_003522457 178 PARQVSVLVLEYYLLSGCvgn----evDLEASLKREVDSAAVAWRKRIFVEggll----kaaEVDARGLILFIAIFGIPT 249
P0DH90       212 SARQVSLLILESFLLMPDrgk---gkvKIESWIKDEAETAAVAWRKRLMTEggla----aaeKMDARGLLLLVACFGVPS 284 thale cress
EFJ36709     315 EYDDEELCRLVTTVARRRQSPALCRALGLAPKIPDVVDKLAKEGKQVEALAFAHAFEIMDRVEPVP-LLKAYLKDAR--- 390
XP_006844773 233 QLENEDLYHLMRLVNLRKRALVLRCSPRFMKKLPDVIEGLISRGNQVAAVDLAYTFGLQDKFKPLP-LLKAFLEDAR--- 308
XP_052148406 259 EFPSQEIFELLHAAGGLACAEVLKCSKHFLDKLRDVVAHMLNRGIYHQTVATIIAFELQDAF-PLSaIATCVIERVG--- 334
7_pfamImport 151 SFKSMDLLDLIRQSGTDEIVGALKRSPFLVPMMSGIVDSSIKRGMHIEALELVYTFGMEDRFSPSS-ILTSFLRMRK--- 226
XP_004252292 188 IFYNEDIRDLIRVSNIREISTALRRSNVLMEKIPDIIAGMVKNKMEVDAVDVAYTFGVEEKCSPCE-ILSSFLEELR--- 263
6_pfamImport 147 QFTNANIRTLLQVSNLKWSFDALKRSNALMAKLPEIIEEMVANKAVIKAVHIVYSVGMQDKFNPRT-LLTTFIRESK--- 222
XP_015169712 352 AFRNEDIKDLLHQSYIKMISSSVRRSSVLMAKIPEIIEGMLNQNMVVDAVYFTFCFGLEDRFNPQR-LLTSFLHESEvsl 430
XP_002511054 275 VFTSGDIWDLIRSSNLQQISDALKRSHVLVTKVSDILERMMNNGMKIEAIDVAYTFGIEDKFPPQK-LLTSFLRDSK--- 350
XP_003522457 250 VFKDEDIYSLVSASNGREFSDALLKSQPLLKRVSDVADGMIKKGMAVKAVDLAYTFGFEEKYSPRT-ALTSFLQKSE--- 325
P0DH90       285 NFRSTDLLDLIRMSGSNEIAGALKRSQFLVPMVSGIVESSIKRGMHIEALEMVYTFGMEDKFSAAL-VLTSFLKMSK--- 360 thale cress
EFJ36709     391 ----KSAQVILKNGNNSAAAQNDSSMKELSALKSVIKCIEEYKLDAQ--FPPQSLQKRIDVLERAKADRKRAAV 458
XP_006844773 309 ----KGKKKQG--------PPDAEWIGRLAALNSVIKCAKDHKFEAA--ISGWNLNAEVAKLEKEKPKRKVdki 368
XP_052148406 335 ----RTKDQDSQEQHHL-PGSKENDEEKLALLRLLSKYVEDPKQCST---ENFSIADRIAMLEQSLAKPHQAFT 400
7_pfamImport 227 ----DSFERAKRQAQAP-MASKTANEKQLDALSSVMKCLEAHKLDPAkeVPGWQIKEQMAKLEKDIVQLDKQME 295
XP_004252292 264 ----ESLKKKKCQSHGShaVVNEANKRELSTMKSVIECLEAHNIDPSklIPRFRISDRIMSLEEKIARNDQrre 333
6_pfamImport 223 ----KLFDNMNGSQSa-HQGNIVAKGKYLGDLRSIIKCLRNHEVDPSkvLPGWEISKRIASLEKEIAEFNKQ-- 289
XP_015169712 431 cnkiQTFEQNKGSKDSAlQEIIGAKRRYLGTLKSVIQCLGRNNIDHSkfLSEWQIGEKVIGLEKEITQFRKNLK 504
XP_002511054 351 ----EALKRRRREANNSpVLLKEASQKHLSTLKSAMKFLEGRKLDPKklLPGWQVTEKIDKLEKEIADLNRKId 420
XP_003522457 326 ----ETWKKAKQDARDFpSALKVAHEKYLAALKSVVNCLEGHKIDFVklLPGWQLKNKITNLEKDIGDANKKIE 395
P0DH90       361 ----ESFERAKRKAQSP-LAFKEAATKQLAVLSSVMQCMETHKLDPAkeLPGWQIKEQIVSLEKDTLQLDKEME 429 thale cress
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