3H5Q,2DSJ


Conserved Protein Domain Family
PYNP_C

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pfam07831: PYNP_C (This model is not part of the current CDD release)
Pyrimidine nucleoside phosphorylase C-terminal domain
This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as E. coli thymidine phosphorylase (TP). The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer.
Statistics
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PSSM-Id: 517917
Aligned: 45 rows
Threshold Bit Score: 70.689
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3H5Q_A 349 VTELVSNDIGVASXXLGAGRLTKEDDIDLAVGIVLNKKIGDKVEEGESLLTIHSNRQD-VDDVVKKLDSSITI 420 Staphylococcus aureus subsp....
Q9RX72 390 VTRVDALSVGRAVLALGGGRERKGEAIDHGVGVELLKKPGEAVGAGEAVLRLYHRGGRgLERAQALLRAGLET 462 Deinococcus radiodurans
Q5SHF9 338 VREVDAYKVGLAVLALGGGRKRKGEPIDHGVGVYLLKKPGDRVERGEALALVYHRRRG-LEEALGHLREAYAL 409 Thermus thermophilus HB8
Q8UJ08 350 LASCATRDLGMVVVELGGGRTKPSDTINPAVGISDILPLGVRVEKGEPIAVVHAASSEdAERAVKRIEDCFGI 422 Agrobacterium fabrum str. C58
Q92T50 350 LTSCKTRELGMAVIELGGGRIRPDDRIDHRVGLTGLRPLGTKVEKGEPIAFVHAADQSqAEAIAKRVVTLYAI 422 Sinorhizobium meliloti 1021
Q6LUH3 351 AYAMDTRGLGMAVVGMGGGRRVASDSIDYAVGLSDMIRLGDEVNTDTALCVIHARSEAqWQEAANAVRANITI 423 Photobacterium profundum SS9
Q74PY8 351 ITAMDTRALGMAVVALGGGRRRATDPIDYSVGLTEMARLGTRVDGQQPLAVIHANNEDdWQQEAEVVRAAITL 423 Yersinia pestis
P07650 351 VSEMDTRALGMAVVAMGGGRRQASDTIDYSVGFTDMARLGDQVDGQRPLAVIHAKDENnWQEAAKAVKAAIKL 423 Escherichia coli K-12
Q7NRT0 351 VGAMDTRGIGMAVCALGGGRRLATDVLDFRVGLSQFVELGQNIGKDTPLMMIHAADEAsFEDAARRVKAAIRI 423 Chromobacterium violaceum AT...
Q9S5X9 346 VSKIDAEKVGIASMMLGAGRKKKEDRIDHSVGIIVEKKLGDSVKKGEAIARLFVSDRSdVESALKLLKEAYVI 418 Thermotoga maritima
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