Conserved Protein Domain Family
RED_N

?
pfam07808: RED_N (This model is not part of the current CDD release)
RED-like protein N-terminal region
This family contains sequences that are similar to the N-terminal region of Red protein. This and related proteins contain a RED repeat which consists of a number of RE and RD sequence elements. The region in question has several conserved NLS sequences and a putative trimeric coiled-coil region, suggesting that these proteins are expressed in the nucleus. The function of Red protein is unknown, but efficient sequestration to nuclear bodies suggests that its expression may be tightly regulated of that the protein self-aggregates extremely efficiently.
Statistics
?
PSSM-Id: 517902
Aligned: 23 rows
Threshold Bit Score: 140.137
Created: 14-Feb-2025
Updated: 28-Apr-2025
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
XP_002952015  55 DKSNAE-DAEDDGAPKYRDRAEERRRGKN-LDY------------EDASAVlSALSGSGGVGGDAG--GDLGTVDLSKLS 118
EDO37189      92 LHKQEE-ERERELASKYRDRARERREGVN-PDY------------QSTDTL-SSTANYRAVGPTQE--ANDTTAERRRLA 154
XP_009028213  74 LKKEED-EKEKELAGKYRDRAKERREGANtADP------------NQTAEV-STTANYRAVAPDID--AGANLAKHRQQL 137
XP_006843829  13 ARRKEE-KQDEPELPKYRDRAKERREDQN-PDY------------EP-----TELGSFHAVAPPGT--VDLRIADAHKIS 71 
O48713        13 ARRREE-KLEESDNPKYRDRAKERRENQN-PDY------------DP-----SELSSFHAVAPPGA--VDIRAADALKIS 71  thale cress
XP_003577889  17 ARRKEEnKKEEPETPRYRDRAKERREDQN-PDY------------EP-----TELGSFHAVAPPGApgADLRLADAQKIS 78 
EGT35793      72 EADEDE-AHLKNILKNYRDRAAERRKQGDvSTQntlnynlidffqEKEDTT-KLTAAYRAVPGDAR--TAQDQADLRKQA 147
Q9N4U5        73 EADEDE-AALKNILKNYRDRAAERRKQGD----------------EKEDPS-KLTAAYRAVPGDAR--SAQDQADLRKQA 132 Caenorhabditis ...
XP_002117518 120 EKSEED-QWKKEIANKYRDRAKERRDGVD-TDY------------QNAAS--HTDTRYRTIGPLGE--SGDSAAERRIKE 181
XP_003546528  14 IRRKEE-KPEEPEVPKYRDRAKERREDQN-PDY------------EQ-----TELG-FHAVAPPGT--VDIRSSDAHKLS 71  soybean
XP_002952015 119 EEETKYLGGDMRFTHLVKGLDYALLHKTRTEITKKKDDdgdGDDDEgraggGADAGSKAEAArdaqaraNARANAASAag 198
EDO37189     155 IQESKFLGGDMEHTHLVKGLDFALLQKVRSEITGEGEE---GEGEH----------KPHKQKa------DRVEEEDEE-- 213
XP_009028213 138 IQESKFLGGDMEHTHLVKGLDYALLEKVKAEIISKEQE---EEMALlektlDKQLVLAFTAIsfsvhplQT-----SE-- 207
XP_006843829  72 IENSKYLGGDLEHTHLVKGLDYALLHKVRSEIDKKPEQ---EEEVD-----------------------GKTRGSKDD-- 123
O48713        72 IENSKYLGGDVEHTHLVKGLDYALLNKVRSEIVKKPDG---EDGDG-----------------------GKTSAPKED-- 123 thale cress
XP_003577889  79 IEKSKYLGGDLEHTHLVKGLDFALLNKVRSEIDKKPDA---EDGKD-----------------------AKARETKED-- 130
EGT35793     148 ILESKYLGGDLEHTHLVKGLDYSLLNKVRSEMTAEDEE---DDEDM------EALETKAAAKpseasslTQELAQSQS-- 216
Q9N4U5       133 ILESKYLGGDLEHTHLVKGLDYSLLNKVRSEIDKSDDD---DDDDIdtafdEKVTSSSSSSKpseasllAQELAQSHS-- 207 Caenorhabditis ...
XP_002117518 182 IQESKYLGGDMEHTHLVKGLDFALLQKVREQMTTDERDeiiEEEDLstqnkVKQVET----------------------- 238
XP_003546528  72 IEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPET---GDDVE-----------------------GKSRSAKED-- 123 soybean
XP_002952015 199 rkEEVRFTAPLARSVFN--TLFSAPRANVREMYLPRRTAFVYDFDNEdSLDTDIPTTLRRPKSECPpAVE-TLFAGMDDA 275
EDO37189     214 --DLPEFKTRQGQRIYK--TIFRSKVPEKNELFQTGRMAYVFELEDE-YAESDIPTTLLRSKADCP-GVEtQTTLTTNDI 287
XP_009028213 208 --DQITFRTKLARNIFRalPKNPNRPIERNDLFIPGRMCYIVDLEENeENDTDIPTTLIRSKADCA-NMEtMTTLSNNDI 284
XP_006843829 124 --QPLSFRTATAKSVYEw-IVKPQTVVKTNEMFLPGRMAFVFDMEED--YAHDIPTTVHRSKADCP-VPQeMVTVSVDGS 197
O48713       124 --QRVTFRTIAAKSVYQw-IVKPQTIIKSNEMFLPGRMTFVYDMEGG--YTHDIPTTLYRSKADCP-VPEeFVTVNVDGS 197 thale cress
XP_003577889 131 --RAISFRTAIAKSVYQs-IVKSQSTPKANEMFLPGRMAFIYNMEDG-LITNDIPTTLHRSKADCP-VPEeMVTVSVDGS 205
EGT35793     217 -------DNRMVRSLHR--VLFKNEIPLRNDMFAKGRMAYVVELEEE---DTDIPTTLLRSLHDLP-RAEsAQSIQANSL 283
Q9N4U5       208 -------ENRMVRSLHR--VLFKNEVPLHNQLFAKGRMAYVVELEDE---ETDIPTTLLRSLHDLP-RAEsAQSIQANNL 274 Caenorhabditis ...
XP_002117518 239 --EEISFRTRLAKNIHN--IVFKSSLPLRNEFFASGRMAYAVDLNDD-EGESDIPTTIIRSKADFQ-NAEtQSDISTNDI 312
XP_003546528 124 --QQVSIRTATAKSVYQw-IVKPQTISKTNEMFLPGRMTFIYNMEGG--YHHDIPTTLHRSKADCP-VPEeMVTVNVDGS 197 soybean
XP_002952015 276 VLDRIARILSYVRTTADGKRLKR 298
EDO37189     288 VINKLTQILSYLRQGMRNKKMKK 310
XP_009028213 285 VINKLTQILTYLRQGRARDKKKK 307
XP_006843829 198 VLDRIAKIMSYLRLGSSGKVLKK 220
O48713       198 VLDRIAKIMSYLRLGSSGKVLKK 220 thale cress
XP_003577889 206 VLDRIAKIMSYLRLGSSGKVLKK 228
EGT35793     284 IISKLAHVLSHLRAEPKkkkkde 306
Q9N4U5       275 IILKLSHVLSHLRAEPKkkkkee 297 Caenorhabditis elegans
XP_002117518 313 VINKLTQILAHLRQGLRSKKLKK 335
XP_003546528 198 VLDRIAKIMSYLRLGSSGKILKK 220 soybean
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap