5O9Z


Conserved Protein Domain Family
RED_C

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pfam07807: RED_C 
RED-like protein C-terminal region
This family contains sequences that are similar to the C-terminal region of Red protein. This and related proteins are thought to be localized to the nucleus, and contain a RED repeat which consists of a number of RE and RD sequence elements. The region in question has several conserved NLS sequences. The function of Red protein is unknown, but efficient sequestration to nuclear bodies suggests that its expression may be tightly regulated or that the protein self-aggregates extremely efficiently.
Statistics
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PSSM-Id: 400247
View PSSM: pfam07807
Aligned: 15 rows
Threshold Bit Score: 151.376
Threshold Setting Gi: 302840939
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5O9Z_R       445 YAECYPATMDDMA--V-DSDEE-VDYSKMDQGNKKG-PLGRWDFDTQEEYSEYMNNKEALPKAAFQYGIKMSE-GRKTRR 518
XP_002129642 411 YAECYPSTQFNIAglGeDSDDE-ADYSKMDNGHKKG-PVGRWDFDTQEEYSSYMSKKEAMPKAAFQYGIKMSG-GRKTRR 487 vase tunicate
Q9N4U5       428 YDECYPGGLVEMGgaW-DSDEE-ADYSKMDAGPKKNqAVNRWDFDTEEEYASYMEGREALPKAAYQYGVKNGEgGRKNKK 505 Caenorhabditis ...
XP_002952015 546 YAECYPGMAGYVGalV-DSDDEgGDLNHMDSKQAKG--KTRADFATDEEWQRYKESRETLPRAAFQYGVKRAD-GRKSHK 621 Volvox carteri ...
XP_009028213 399 YAECYPGMMESVDalG-DSDDE-ADYTKMDQGNKKG-PVGRWDFETQEEYSTYMSAREAMPKAAFQYGVKMAD-GRKTRR 474 Helobdella robusta
XP_002600932 424 YAECYPGMGEILGg--dDSDDE-VDYTKMDQGNKKG-PIGRWDFDTQEEYSEYMSNKEALPKAAFQYGIKMAD-GRKTRR 498 Florida lancelet
XP_011683684 494 YFECYPGAMETADalD-DSDDD-VDYSKMDQGNKKG-PVGRWDFDTAEEYSDYMNQKEALPKAAFQFGIKTSE-GRKTRR 569 purple sea urchin
XP_001629252 417 YAECYPGAMEVADttY-DSDDD-ADYTKMDLGNKKG-PIKRWDFEDEEQYNSYMETREALPKAAFQFGIKMSE-GRKTRR 492 starlet sea ane...
XP_002117518 433 YAECYPGAMEVDDamA-DSDEE-ADYSKMDMGNKKG-PVGRWDFENEEDYNKYMEKREALPKAAFQFGVKMAD-GRKTRR 508 Trichoplax adha...
CDS42869     478 YDECYPGFAESYDamG-DSDEE-TDFSKMDMGNKKG-PVGRWDFETQEEYGDYMSSLEAMPRAAYQYGVKKPE-GRKTRR 553 Echinococcus mu...
5O9Z_R       519 FK-------E-TNDKAELDRQWKKISAIIEKRKKMEADG 549
XP_002129642 488 TR-------E-QNEKQKLNRELQQIQQIITKRKGGPSSS 518 vase tunicate
Q9N4U5       506 QS-------A-VSDAKRLDRELNEINKIMDKRKAGGDGA 536 Caenorhabditis elegans
XP_002952015 622 ELekg-avvEqRQRDQKLDGQLRKIERLLQDKGHDHGQA 659 Volvox carteri f. nagariensis
XP_009028213 475 AG-------P-RDDKKELDREWSKIQNIISKRKPGDDIA 505 Helobdella robusta
XP_002600932 499 AG-------P-KDEMKELDREWKKIQNIIEKRKTKSGGG 529 Florida lancelet
XP_011683684 570 THp------E-KNEKAALDREWQKISQIIAKRKETGEGR 601 purple sea urchin
XP_001629252 493 TG-------P-KDEKTKLDRDWQRISRMLATKSKSEEDG 523 starlet sea anemone
XP_002117518 509 QG-------V-KDDKSKLDREWQQISNIIKKRKEMGTGG 539 Trichoplax adhaerens
CDS42869     554 LGggggpggSqKNERAEVDRQLQQITSLINKRKQMAQEA 592 Echinococcus multilocularis
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